Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein Tob1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13188 g13188.t2 isoform g13188.t2 28421397 28428238
chr_1 g13188 g13188.t2 exon g13188.t2.exon1 28421397 28421750
chr_1 g13188 g13188.t2 exon g13188.t2.exon2 28422574 28423132
chr_1 g13188 g13188.t2 cds g13188.t2.CDS1 28422980 28423132
chr_1 g13188 g13188.t2 exon g13188.t2.exon3 28428062 28428238
chr_1 g13188 g13188.t2 cds g13188.t2.CDS2 28428062 28428238
chr_1 g13188 g13188.t2 TSS g13188.t2 NA NA
chr_1 g13188 g13188.t2 TTS g13188.t2 NA NA

Sequences

>g13188.t2 Gene=g13188 Length=1090
TTCTCATGCCAAGACTTATCTCAGACAGTCGCACAAATACAAATATAAAATTTTCCCGAC
ACGACGACAGTCGAGAGAGTAAAAATTTTTAAGAGAGTAAAAAGATAATGAAGAGTATGA
GGTAGTCGGCAGTGAAAATACAAAAACAACAAGAAAAAAATTCACAATTTTTCACAGCAC
AGTTGGAAAAGACCGACATCAGTTCTAATTCGTACGTTGAGGCAGAAACATTGAAAAATA
AAAAAGTCGAAAGGGGCGAAAGTATAGTGAAAAAAAATATTAATAATAATTTTTTATACA
AAAAGTATTAGTAAAATAAATCTAGAGTGAAAATGTGTCATTTATAGTTAAAATCTAAAA
AGGGCACCCGTGTGTGTAACTTTAACAACAAAAACGCTTGTGTAATTTGCTTGGTAAAAT
AATAATAATAACATCAGAGCAGCAGCAGCAGTAGAGTGAAGTGTTGTGTGTAAAAAAAGT
AACAGAAAACTGCAATAAAAAAGTTTTTTTTCTGCCTCTCTCAGTTCTCGGTTTAAAAAA
GAACTTCAAAAAGTGAAAGATTATTGGTGCTTTTATGTGTGTTCTCATCATACGCTCTCG
TGTTCCTGTTTTTATCTATGTGTAAACGCGCACGAGTATAGTCGAAACGAATAAAAATTT
ATTAACAAAGGAGTCATCGAAAAAAAATATAAATAATTTATTTTCATTTATTACAAGCAA
GTGCAAGTGTAGTAAGAAAAGAAAACTGACCGAATAAAAGATGCACATTGAGATTCAAGT
TGCATTGAACTTTGTCATATCGTACCTTTACAATAAGCTTCCACGTCGGAGGGTCAATAT
CTTTGGCGAGGAGTTAGAGAAAGCATTAAAGCACAAATTTCAAGGGCACTGGTATCCTGA
TAAGCCATTCAAAGGCTCAGCATTTCGATGCCTAAAAACAGGTGAACCGATTGATGTTGT
ACTAGAAATTGCTGCACGTGAAAGTGGCGTACCAATTGGTGACATTTTAGAGAATTTACC
AGCCGAACTGTCTGTTTGGGTTGATCCAGGCGAAGTTTCATATCGTATTGGTGAAAAGGG
TGCGGTCAAG

>g13188.t2 Gene=g13188 Length=110
MHIEIQVALNFVISYLYNKLPRRRVNIFGEELEKALKHKFQGHWYPDKPFKGSAFRCLKT
GEPIDVVLEIAARESGVPIGDILENLPAELSVWVDPGEVSYRIGEKGAVK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13188.t2 Gene3D G3DSA:1.20.120.1120 - 1 110 9.9E-47
2 g13188.t2 PANTHER PTHR17537:SF5 TOB, ISOFORM A 1 110 1.4E-63
3 g13188.t2 PANTHER PTHR17537 TRANSDUCER OF ERBB2 TOB 1 110 1.4E-63
4 g13188.t2 PRINTS PR00310 Anti-proliferative protein BTG1 family signature 29 58 1.1E-17
6 g13188.t2 PRINTS PR00310 Anti-proliferative protein BTG1 family signature 59 88 1.1E-17
5 g13188.t2 PRINTS PR00310 Anti-proliferative protein BTG1 family signature 89 110 1.1E-17
1 g13188.t2 Pfam PF07742 BTG family 1 109 8.8E-38
9 g13188.t2 ProSitePatterns PS01203 BTG family signature 2. 86 105 -
8 g13188.t2 SMART SM00099 btg1_nr 1 106 8.8E-53
7 g13188.t2 SUPERFAMILY SSF160696 BTG domain-like 1 108 1.24E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed