General information for g13195.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Nuclear pore complex protein Nup160-like protein.
Parent gene
- The parent gene g13195 is located on chr_1: 28455021..28458773 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13195 | g13195.t3 | isoform | g13195.t3 | 28453783 | 28455021 |
| chr_1 | g13195 | g13195.t3 | exon | g13195.t3.exon1 | 28453783 | 28454879 |
| chr_1 | g13195 | g13195.t3 | cds | g13195.t3.CDS1 | 28453785 | 28454879 |
| chr_1 | g13195 | g13195.t3 | exon | g13195.t3.exon2 | 28454938 | 28455021 |
| chr_1 | g13195 | g13195.t3 | cds | g13195.t3.CDS2 | 28454938 | 28455021 |
| chr_1 | g13195 | g13195.t3 | TTS | g13195.t3 | 28455124 | 28455124 |
| chr_1 | g13195 | g13195.t3 | TSS | g13195.t3 | NA | NA |
Sequences
>g13195.t3 Gene=g13195 Length=1181
AAATGTCACGAAGGAAAGACTGCCTTAGGCAACTTGTCATCATGCTATTTCAAGAGAAAC
GCTTCGACATTCTCATCAATTTTCCATACAATAATCTAGAACAGGATTTGCAAAATATTG
TTGAAACTCGTGCACGGTCGATGCAAATTGAAAACAATGAACACTACAATTTCCTCTATT
CATATCATATCAAGACTAATAATATGAAGAGAGCTGCCATAGTTATGTATGAGAAGGCAC
TACGTTATTTGTATGAAGGAAACACAGTTGAAGCTCTACAACAACGATACAATAGTTTAC
TTGCATGCTACAATGCACTCTCATTAGTTGACGTCGCATATCGTTGGCTAGCTAAACCGG
TAATAGAAGATCCTAAAACAGAAGAAGATGCTGATGAAATGATGGAGAGTGAATCACCAA
CACAAATTGAGGTCATTGAAATAAAAGATATTCAAAAGGAATTGCTTGTGGCTGAATCTC
TTTTATGCATTGCAAAATCAAAGGATTTGAAATTGATTATGAAAATGGGACCAAAGGAAC
TTATAATTCTGTTGTCGAATCAGCGTTTCTATACTACAGCATTGAAGCTGGCCAAAGGAT
ATAAGCTATCGTTAGCACCAATTTTTGAAAGTTTAACTCTAGCTTGCTTAAAATCATCAA
ATATCGAGTTCAATGACAATCTCGATTGGCTTAATCAAAACAATTTGGGTGATTTGTCTT
TAACAGTGAGTTGCAGTGAAATGTCTTGGATTTATTTGAAAAAGCTATTGGAAGATGAAG
ATAAAGAGAATGAATATTGTCGCGAAGTAGTTCGTCATATTTTGGCTAATCAAGCATTTA
TTCCTCAATGGCTTTTGGATATTTACAAGAAAAATAAACCATCTGAATTACTTTATTTGT
ATCTTCAATATGGTCGACTTGATGAAGCTGCTGAGCTGGCAATTGATTTTGTGAGAGCTT
TCTTAGGATATGGAAGTGAAATTTTCGGATTTAATACTTACATTGCTAAAACTCATCCAT
CATTTCCGGTTAACACAATTGATTTGTTATTATATCAACTTAAAGCACATGGTGAAAAGG
ATCAAACATGTCGAGATAATTATAAGCTACTGAAAGAAACAATTAATGAATATTTGAAAA
CTGCAAATACAATGACTTTGGAGAGTATGGTAGCAATTTAA
>g13195.t3 Gene=g13195 Length=392
MSRRKDCLRQLVIMLFQEKRFDILINFPYNNLEQDLQNIVETRARSMQIENNEHYNFLYS
YHIKTNNMKRAAIVMYEKALRYLYEGNTVEALQQRYNSLLACYNALSLVDVAYRWLAKPV
IEDPKTEEDADEMMESESPTQIEVIEIKDIQKELLVAESLLCIAKSKDLKLIMKMGPKEL
IILLSNQRFYTTALKLAKGYKLSLAPIFESLTLACLKSSNIEFNDNLDWLNQNNLGDLSL
TVSCSEMSWIYLKKLLEDEDKENEYCREVVRHILANQAFIPQWLLDIYKKNKPSELLYLY
LQYGRLDEAAELAIDFVRAFLGYGSEIFGFNTYIAKTHPSFPVNTIDLLLYQLKAHGEKD
QTCRDNYKLLKETINEYLKTANTMTLESMVAI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g13195.t3 | PANTHER | PTHR21286 | NUCLEAR PORE COMPLEX PROTEIN NUP160 | 2 | 369 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
