General information for g1322.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Serine/threonine-protein kinase ULK2.
Parent gene
- The parent gene g1322 is located on chr_3: 9695545..9696444 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1322 | g1322.t6 | isoform | g1322.t6 | 9692030 | 9696444 |
| chr_3 | g1322 | g1322.t6 | exon | g1322.t6.exon1 | 9692030 | 9692186 |
| chr_3 | g1322 | g1322.t6 | cds | g1322.t6.CDS1 | 9692032 | 9692186 |
| chr_3 | g1322 | g1322.t6 | exon | g1322.t6.exon2 | 9694360 | 9694634 |
| chr_3 | g1322 | g1322.t6 | cds | g1322.t6.CDS2 | 9694360 | 9694634 |
| chr_3 | g1322 | g1322.t6 | exon | g1322.t6.exon3 | 9694699 | 9695291 |
| chr_3 | g1322 | g1322.t6 | cds | g1322.t6.CDS3 | 9694699 | 9694844 |
| chr_3 | g1322 | g1322.t6 | exon | g1322.t6.exon4 | 9695370 | 9695543 |
| chr_3 | g1322 | g1322.t6 | exon | g1322.t6.exon5 | 9696355 | 9696444 |
| chr_3 | g1322 | g1322.t6 | TSS | g1322.t6 | 9696734 | 9696734 |
| chr_3 | g1322 | g1322.t6 | TTS | g1322.t6 | NA | NA |
Sequences
>g1322.t6 Gene=g1322 Length=1289
ATGGAGACTGTTGGTGAATTCGAATATAATCCGAAGGAGCTGATAGGACATGGTGCATTT
GCAGTTGTTTTTCGAGGCCGTCACAAAAAGAAACACTTTCCAGTTGCTATTAAGAGCATA
ACGAAGAAGAGTCTTGCAAAGTCGCAGAACTTGCTTGGCAAGGAAATTAAAATACTCAAA
GAACTCACAGAACTGCATCATGAGAACGTTGTTGCGTTGCTTGATTGCAAAGAATCGCAA
CATAATGTATATCTTGTCATGGAGTATTGCAATGGTGGTGATTTAGCGGATTATTTAACA
GCCAAAGGCACGCTTAGCGAAGAGACTATAAGATTATTCCTCATACAATTGGGTAATAAA
AAAATTGATTTTTTCTTCGTCTTTCTTACAATATCTTACAATTGTTGTTTTTATTACTTT
CATTTCTTGTAGCTGGTGCCATGAAAGCTCTCTTTGCAAAAGGTATTGTACATCGCGATC
TCAAACCTCAGAATATTTTATTGAGTCACAATTGTGGCAAAAGTTTACCCGCACCGGCAA
ATATCACACTGAAAATTGCCGATTTTGGGTTTGCCAGATTTTTACAAGAAGGAAATATGG
CTGCTACTCTTTGCGGATCACCAATGTAAGAAAATACAAAATTTTAAAAATAGATTTAGA
TAATTAATGATAATTTATCTATATATCAGGTATATGGCACCAGAAGTAATAATGTCACTT
CAATATGATGCAAAAGCAGATCTGTGGTCACTTGGAACTATTGTGTTTCAATGTTTAACT
GGAAAAGCACCATTCCAAGCTCATACACCTCAAGAGCTTAAAAATTTCTACGAAAAGAAT
GCAAATCTTGCTCCAAAAATTCCGCCAGGTACATCACAAGAACTTCAGAATCTTCTTTTT
GGATTACTTCGTCGCAATGCTAAAGAACGAATGCCATTTGATGTGTTTTTCAATCATCAA
TTCTTGCAACGTAATCCACCCACACCACAACAATCGGCATCAGCCGATTTACCATCACCA
TACTCCAATCAACCAAAATCAAATGCCACAGTGACAACGAAGAATCAACCACCGCAAATG
GCGGCGGCAAACAATAACATCAACAACAATAATAATAATAACACTAAAATTGTCGAAATA
AATGAAATAGAGACAACAGCAGCTGGCTATGAAAGTATTGGTGATGGTACAAATAATAAT
AATGAATCAAGCAGTCCCGACAATTCTGATGATTTCGTTTTAGTGCCCAATAATTTACCC
GTTGTCGATGCACAAGCATATGACAGGAA
>g1322.t6 Gene=g1322 Length=192
MSLQYDAKADLWSLGTIVFQCLTGKAPFQAHTPQELKNFYEKNANLAPKIPPGTSQELQN
LLFGLLRRNAKERMPFDVFFNHQFLQRNPPTPQQSASADLPSPYSNQPKSNATVTTKNQP
PQMAAANNNINNNNNNNTKIVEINEIETTAAGYESIGDGTNNNNESSSPDNSDDFVLVPN
NLPVVDAQAYDR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1322.t6 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 155 | 0.00 |
| 2 | g1322.t6 | PANTHER | PTHR24348:SF18 | SERINE/THREONINE-PROTEIN KINASE ULK2 | 1 | 121 | 0.00 |
| 3 | g1322.t6 | PANTHER | PTHR24348 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED | 1 | 121 | 0.00 |
| 1 | g1322.t6 | Pfam | PF00069 | Protein kinase domain | 4 | 85 | 0.00 |
| 6 | g1322.t6 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 85 | 13.22 |
| 4 | g1322.t6 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 111 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed