Gene loci information

Transcript annotation

  • This transcript has been annotated as Serine/threonine-protein kinase ULK1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1322 g1322.t9 isoform g1322.t9 9694931 9696444
chr_3 g1322 g1322.t9 exon g1322.t9.exon1 9694931 9695123
chr_3 g1322 g1322.t9 cds g1322.t9.CDS1 9694933 9695123
chr_3 g1322 g1322.t9 exon g1322.t9.exon2 9695204 9695291
chr_3 g1322 g1322.t9 cds g1322.t9.CDS2 9695204 9695291
chr_3 g1322 g1322.t9 exon g1322.t9.exon3 9695370 9695543
chr_3 g1322 g1322.t9 cds g1322.t9.CDS3 9695370 9695543
chr_3 g1322 g1322.t9 exon g1322.t9.exon4 9696355 9696444
chr_3 g1322 g1322.t9 cds g1322.t9.CDS4 9696355 9696444
chr_3 g1322 g1322.t9 TSS g1322.t9 9696734 9696734
chr_3 g1322 g1322.t9 TTS g1322.t9 NA NA

Sequences

>g1322.t9 Gene=g1322 Length=545
ATGGAGACTGTTGGTGAATTCGAATATAATCCGAAGGAGCTGATAGGACATGGTGCATTT
GCAGTTGTTTTTCGAGGCCGTCACAAAAAGAAACACTTTCCAGTTGCTATTAAGAGCATA
ACGAAGAAGAGTCTTGCAAAGTCGCAGAACTTGCTTGGCAAGGAAATTAAAATACTCAAA
GAACTCACAGAACTGCATCATGAGAACGTTGTTGCGTTGCTTGATTGCAAAGAATCGCAA
CATAATGTATATCTTGTCATGGAGTATTGCAATGGTGGTGATTTAGCGGATTATTTAACA
GCCAAAGGCACGCTTAGCGAAGAGACTATAAGATTATTCCTCATACAATTGGCTGGTGCC
ATGAAAGCTCTCTTTGCAAAAGGTATTGTACATCGCGATCTCAAACCTCAGAATATTTTA
TTGAGTCACAATTGTGGCAAAAGTTTACCCGCACCGGCAAATATCACACTGAAAATTGCC
GATTTTGGGTTTGCCAGATTTTTACAAGAAGGAAATATGGCTGCTACTCTTTGCGGATCA
CCAAT

>g1322.t9 Gene=g1322 Length=181
METVGEFEYNPKELIGHGAFAVVFRGRHKKKHFPVAIKSITKKSLAKSQNLLGKEIKILK
ELTELHHENVVALLDCKESQHNVYLVMEYCNGGDLADYLTAKGTLSEETIRLFLIQLAGA
MKALFAKGIVHRDLKPQNILLSHNCGKSLPAPANITLKIADFGFARFLQEGNMAATLCGS
P

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g1322.t9 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1 89 9.1E-30
9 g1322.t9 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 90 181 5.4E-24
2 g1322.t9 PANTHER PTHR24348:SF18 SERINE/THREONINE-PROTEIN KINASE ULK2 1 181 5.2E-93
3 g1322.t9 PANTHER PTHR24348 SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 1 181 5.2E-93
1 g1322.t9 Pfam PF00069 Protein kinase domain 9 180 1.5E-43
7 g1322.t9 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 15 38 -
6 g1322.t9 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 129 141 -
10 g1322.t9 ProSiteProfiles PS50011 Protein kinase domain profile. 9 181 33.884
5 g1322.t9 SMART SM00220 serkin_6 9 181 2.2E-14
4 g1322.t9 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 9 181 1.07E-51

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed