General information for g13263.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lactase-like protein.
Parent gene
- The parent gene g13263 is located on chr_1: 28852462..28858079 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13263 | g13263.t14 | TTS | g13263.t14 | 28851896 | 28851896 |
| chr_1 | g13263 | g13263.t14 | isoform | g13263.t14 | 28852462 | 28855024 |
| chr_1 | g13263 | g13263.t14 | exon | g13263.t14.exon1 | 28852462 | 28852862 |
| chr_1 | g13263 | g13263.t14 | cds | g13263.t14.CDS1 | 28852462 | 28852862 |
| chr_1 | g13263 | g13263.t14 | exon | g13263.t14.exon2 | 28853017 | 28853190 |
| chr_1 | g13263 | g13263.t14 | cds | g13263.t14.CDS2 | 28853017 | 28853125 |
| chr_1 | g13263 | g13263.t14 | exon | g13263.t14.exon3 | 28853242 | 28853420 |
| chr_1 | g13263 | g13263.t14 | exon | g13263.t14.exon4 | 28853477 | 28853633 |
| chr_1 | g13263 | g13263.t14 | exon | g13263.t14.exon5 | 28854062 | 28854191 |
| chr_1 | g13263 | g13263.t14 | exon | g13263.t14.exon6 | 28854276 | 28854341 |
| chr_1 | g13263 | g13263.t14 | exon | g13263.t14.exon7 | 28854412 | 28854674 |
| chr_1 | g13263 | g13263.t14 | exon | g13263.t14.exon8 | 28854751 | 28855024 |
| chr_1 | g13263 | g13263.t14 | TSS | g13263.t14 | NA | NA |
Sequences
>g13263.t14 Gene=g13263 Length=1644
TTGTAGACTAGTTTGCTTAACTTCTAATGGATTAATTAAGTCGATTTCAGAATTAAAACA
CAAATTTTAACAAAAGAAATGAATCTGCTTAATCAACTAAATGCAAGGAAGAAAACTACG
CTAAAAAACAGGAGAAAAAGAAGCAAAGAAAAAAAATATTGATGCGAAAATTGAATTTTA
ATAAAAAATAATGATTTACCCACGTGTTGCTTTACATTTATGCTTTTCTTCCGCAGTCCA
TTGTATCTAAAATGAAAATATTCATTCTATATAGTAACTTTACATCTTGTGCCAATTGTG
TGTGATTACTAAAAAAATTGATCAGGAATATTTTCTAAAAATCGAGCATGTAGTTTGAAG
AAAATATTATTGCTGTTTGACTTTTCTAGTATAAAAGGTGTTATTTTTCTAGCGATCAAC
TTAGTTCTATTTTAAAAGTTAGAACGATAGGACATGCAAAAGTGAAGTAGCTTTAAGAAT
GAATAAGAGTGCTTCCTTGTGTAAATTTTTGTTGATAAGTTTATTATATTTATCTATATT
TGTGCGATGTGAAAAATTTGAATCATTTCCTGATGAATTCAAATGGGGAGTTGGGACATC
AAGCTATCAAATTGAAGGTTCATGGAATGTTGATGGAAAAAGTGAATCTATTTGGGATCA
TTTGACACACAATTTTCCTGAAAAAATTGAAGATCAAAGCAATGCTGATCATACTACAGA
AAGCTATAAATTTTGGAAGCGTGATGTTGAGATGGTTCGTGAACTGGGAGTTGGTGTTTA
TCGTTTTTCAATATCATGGCCAAGAGTGTTACCGAATGGCTATAAAAATCACATTAACAG
AGCAGGTTTAGACTATTACAATAACATCATCAATGGTAATTATTGAGTTTAATTGTTGAC
TTACAACATTACACCATTTGTAACAATCTATCATTGGGAATTGCCACAAAGACTGCAAGA
ACTCGGAGGCTGGACAAATCCAGAATTGATTGATATTTTTATTGATTATGCAAAAGTCTT
GTTTGACGAATTTGGTGATCGTGTAAAAATGTGGACAACATTCAATGAGTCGTAAATTTT
TCTTTCATTTCATAGCCTTGGCATATTTGTGAACAAGCTTATGGACAAGATTATATGGCA
CCTTCTTACGATTATCCAGGTATTCCGATATACCTCTGTGGTCACAATTTATTGAAAGCA
CATGCGAAAGTTTATCATATGTACAAAAACATATATAATCATGGTATTATTGGAATTACA
GCAGACATTAGCACACCTCATCCACTAAATCACAATCATCATCATGATCAACAAGCAGTA
GAACGAGCATATCAATTTTATCTCGGATGGTTTATGCATCCTATTTTCTCTAAGCATGGG
AATTATCCAAAAATTATGATTGATCGAATTGGTGAATTAAGTAAGAAGCAAGGATTTACA
AAATCTCGTCTACCAACATTTACTAATGATGAAATAAAAATGATTCATAAAACATCGGAT
TTCTTCGGTATCAATAGCTACACATCAATTCAAGTGACATTAAATGATGATGACACAAAT
CCTGCTAAGCATAAAATCCCTTCCTTTTTTCATGATATGGGAACAATAGAGTCACAAAAT
GAAAATTGGGAGAAAAGTGGAAGT
>g13263.t14 Gene=g13263 Length=170
MAPSYDYPGIPIYLCGHNLLKAHAKVYHMYKNIYNHGIIGITADISTPHPLNHNHHHDQQ
AVERAYQFYLGWFMHPIFSKHGNYPKIMIDRIGELSKKQGFTKSRLPTFTNDEIKMIHKT
SDFFGINSYTSIQVTLNDDDTNPAKHKIPSFFHDMGTIESQNENWEKSGS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13263.t14 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 170 | 0 |
| 2 | g13263.t14 | PANTHER | PTHR10353 | GLYCOSYL HYDROLASE | 12 | 165 | 0 |
| 1 | g13263.t14 | Pfam | PF00232 | Glycosyl hydrolase family 1 | 8 | 147 | 0 |
| 3 | g13263.t14 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 2 | 164 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
