General information for g13264.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13264 is located on chr_1: 28856522..28859179 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13264 | g13264.t4 | TSS | g13264.t4 | 28854926 | 28854926 |
| chr_1 | g13264 | g13264.t4 | isoform | g13264.t4 | 28855024 | 28856402 |
| chr_1 | g13264 | g13264.t4 | exon | g13264.t4.exon1 | 28855024 | 28855211 |
| chr_1 | g13264 | g13264.t4 | cds | g13264.t4.CDS1 | 28855024 | 28855211 |
| chr_1 | g13264 | g13264.t4 | exon | g13264.t4.exon2 | 28855584 | 28855712 |
| chr_1 | g13264 | g13264.t4 | cds | g13264.t4.CDS2 | 28855584 | 28855712 |
| chr_1 | g13264 | g13264.t4 | exon | g13264.t4.exon3 | 28855765 | 28855967 |
| chr_1 | g13264 | g13264.t4 | cds | g13264.t4.CDS3 | 28855765 | 28855771 |
| chr_1 | g13264 | g13264.t4 | exon | g13264.t4.exon4 | 28856032 | 28856402 |
| chr_1 | g13264 | g13264.t4 | TTS | g13264.t4 | 28856971 | 28856971 |
Sequences
>g13264.t4 Gene=g13264 Length=891
ATGAAACTTAAAGTGCTTGCATTTATTTTCTTGTTGATTTCCTGCACTATTGCGGATGAA
GAAGATAATAAAATTGAGGCTGAAGAAGAACCAGAAAAAGACCATACATTAGTTTTGACA
GATGAAAATTTTGATGACACCATCAAATCCAGTGAAACAGCAATTTTTACAATGTTTTAT
GCACCATGGTGTGGACACTGTACAAGATTAAAGCCTACATGGTCACAATTAGCAGAAATG
CTTAATACACAAGATGAAAGTCGTGTGCGAATTGCAAAAGTTGATTGTACTGAAAATGCA
AAAACATGCAGTGATAACCTGTGAAATATCGTTCAACTCGTGATCTTCCTTCACTTACTC
AATTTATCAACGATCAACTCGGAGCCTCAACAGAAGAAGAAGAAACAGGAAGTCAAGATG
CAGTTCCAGCTCCTCTCACTGGTCTCATTGAGCTTAATGAAAAGAATTTCCATGAGCTTA
CCTCAAAAGGGAAATTCTTTGTCAAATTTTATGCACCATGGTGTGGTCATTGTCAGAAAT
TGTCACCAATTTGGAACGATTTAGCTTCAGCATTGGAACATGATGAATCAGTAAATATCG
CCAAGATTGATTGCACAGAACACAGACCAATTTGCAAAGACTTTGATGTCAAAGGATACC
CCACTTTACTTTGGTTGGAAAATGGAAAGAAAGTTGATAAATACAGTGGTTCACGCACGG
TTGAAGACTTGAAAGATTATGTTGAAAAGAGACTGAATACTAAATCAGAAGATACAGAGG
AAAAGAAAGAAATTCCAGAAGAAGGTGAAGGTGCAGCTGTACTTTCACTCTCAGGCGATT
CATTTGAACAAGCTATTAAGGAAGATGTAACATTCATCAAATTTTTTGCAC
>g13264.t4 Gene=g13264 Length=107
MKLKVLAFIFLLISCTIADEEDNKIEAEEEPEKDHTLVLTDENFDDTIKSSETAIFTMFY
APWCGHCTRLKPTWSQLAEMLNTQDESRVRIAKVDCTENAKTCSDNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13264.t4 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 14 | 106 | 5.6E-27 |
| 2 | g13264.t4 | PANTHER | PTHR45672 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED | 19 | 105 | 5.6E-21 |
| 1 | g13264.t4 | Pfam | PF00085 | Thioredoxin | 36 | 105 | 2.0E-18 |
| 7 | g13264.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 8 | g13264.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 9 | g13264.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 13 | - |
| 10 | g13264.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 6 | g13264.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 107 | - |
| 12 | g13264.t4 | ProSitePatterns | PS00194 | Thioredoxin family active site. | 56 | 74 | - |
| 13 | g13264.t4 | ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 15 | 6.0 |
| 3 | g13264.t4 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 29 | 104 | 2.37E-22 |
| 4 | g13264.t4 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 11 | g13264.t4 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed