Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13266 g13266.t2 isoform g13266.t2 28858628 28860036
chr_1 g13266 g13266.t2 exon g13266.t2.exon1 28858628 28858637
chr_1 g13266 g13266.t2 exon g13266.t2.exon2 28859424 28859675
chr_1 g13266 g13266.t2 cds g13266.t2.CDS1 28859491 28859675
chr_1 g13266 g13266.t2 exon g13266.t2.exon3 28859745 28860036
chr_1 g13266 g13266.t2 cds g13266.t2.CDS2 28859745 28860036
chr_1 g13266 g13266.t2 TTS g13266.t2 28860096 28860096
chr_1 g13266 g13266.t2 TSS g13266.t2 NA NA

Sequences

>g13266.t2 Gene=g13266 Length=554
TGTACATTTTTTGAACACTTGCTCTCGATCGATGTCTGTGTCTCTCTTTTCAATTGCGTT
TAATTTATTGTTAAAGGATGACGTGTTTAAAATTATTTTTCTATTTACTCGTCATAACAA
TTATAGCAAGTAGTAGTGATGGAAAGCCCAACGCAGCACAGTCTTCGAGTGGTGAATATG
TTTCAACTCCTCTCACTAATAAAAATTATAAGGAAATTCTTAAAAATAACAAATATGTCT
TCATAAAATTCTATACGGATTGGTGTGCATTCAGTAAAAAGATTTTAAAAATTTGGGAAA
ATGTTGGAGAACATTATGAAGATTCTGAAGACATTTTAATTGCAGAAATGGATTGTGGAA
AATTTAAACCAATATGTCAAAAGTTTAATGTCCGCGAATATCCGACTTTAATCATTTTCA
AAGATGGAAAAAGATTTGAGCGATATATAGGACCACGAACGACTAAAGATTTTGTCAATT
ACATTGACAAGTTTATTGCTAAGAGAAAAATTAAAGATCTCAATGAGAAAAATAAAATTC
AACAACAGCAATAA

>g13266.t2 Gene=g13266 Length=158
MTCLKLFFYLLVITIIASSSDGKPNAAQSSSGEYVSTPLTNKNYKEILKNNKYVFIKFYT
DWCAFSKKILKIWENVGEHYEDSEDILIAEMDCGKFKPICQKFNVREYPTLIIFKDGKRF
ERYIGPRTTKDFVNYIDKFIAKRKIKDLNEKNKIQQQQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g13266.t2 CDD cd02961 PDI_a_family 37 136 9.04829E-35
6 g13266.t2 Gene3D G3DSA:3.40.30.10 Glutaredoxin 18 154 4.3E-32
2 g13266.t2 PANTHER PTHR45672 PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 33 148 1.1E-27
1 g13266.t2 Pfam PF00085 Thioredoxin 38 138 1.4E-22
8 g13266.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 22 -
9 g13266.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 5 -
10 g13266.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 6 17 -
11 g13266.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 18 22 -
7 g13266.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 23 158 -
14 g13266.t2 ProSiteProfiles PS51352 Thioredoxin domain profile. 17 141 12.628
3 g13266.t2 SUPERFAMILY SSF52833 Thioredoxin-like 37 142 2.3E-31
5 g13266.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 22 -
13 g13266.t2 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 19 -
4 g13266.t2 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 26 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed