General information for g13302.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trehalose-6-phosphate synthase beta].
Parent gene
- The parent gene g13302 is located on chr_1: 29013994..29015173 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13302 | g13302.t10 | TTS | g13302.t10 | 29010178 | 29010178 |
| chr_1 | g13302 | g13302.t10 | isoform | g13302.t10 | 29010236 | 29011487 |
| chr_1 | g13302 | g13302.t10 | exon | g13302.t10.exon1 | 29010236 | 29010909 |
| chr_1 | g13302 | g13302.t10 | cds | g13302.t10.CDS1 | 29010571 | 29010909 |
| chr_1 | g13302 | g13302.t10 | exon | g13302.t10.exon2 | 29011047 | 29011209 |
| chr_1 | g13302 | g13302.t10 | cds | g13302.t10.CDS2 | 29011047 | 29011209 |
| chr_1 | g13302 | g13302.t10 | exon | g13302.t10.exon3 | 29011284 | 29011414 |
| chr_1 | g13302 | g13302.t10 | cds | g13302.t10.CDS3 | 29011284 | 29011339 |
| chr_1 | g13302 | g13302.t10 | exon | g13302.t10.exon4 | 29011483 | 29011487 |
| chr_1 | g13302 | g13302.t10 | TSS | g13302.t10 | NA | NA |
Sequences
>g13302.t10 Gene=g13302 Length=973
ATTCGGTTTGTCATGATGGAGCTTGGGTAGAGAACAAAGGTGCCCTTTTGACTTTCCATT
ATCGTGATACACCAAATGAAATGCGTCCACAAATGATTGACAAGGCAAAATTTTTGATTG
AGCATTTTGGATTCACTGCAAGTGAATCACTATGTGCTATTGAAGCTAAGCCACCAGTCC
CTTGGAATAAAGGACGTGCTTCAATTTATATTCTTCGTACTGCATTTGGTGTTGATTGGA
GTGAGAGAATCAAAATTATTTACGTTGGAGATGACGTCACTGATGAGGACGCAATGATGG
CTCTACGAGGCATGGCAGCGACGTTCAGAATCGCAAGTTCCAATATTATTAAAACCGCAG
CTGAACGCCGTTTGCCCTCCACCGATTCCGTTCTCACCATGTTAAAATGGATTGAGCGTC
ATTTTATGAATAAACGTCCACGTAAGATCTCAAATAATCAGCGACCAAAGAAAGTTTCTT
CATTTAACAATAACAATAGTATCGGTTTTCCTATCCATATGTCATTCGACTTAACCACCT
CCCCTTCAAGAAGTCCACGTTCATCTCCATTACCAAGCCCATCCTATAGTCAAGAAAGTA
GCAGCAGTAACAGTAGCAGCAGCAGTGAAGAATCATAGAATTTCTTTTTATTTAGTAAAT
TTTTAATTATCAATAATCTTGATAGGTTCAATAGAGTTTTTTTAATCGTTCCTAATAATT
TTTACAAATTTTCAATGAAATAATTTGATGAAATTCTAATATATATAGAATTTTAATGTT
ATGCCAAAAATTTTTAAAATTAAATAATTATTATTGTCTCTTCTTTTCTATTGGACATTC
TAGACAATGCATAAAAATATTTTTCAAAACGAATTTTATAAATAAGGCAAAAAAACTTAA
ATTTAAGGAGAAAAAATTTATTTCTGTGAATTATAAAATATTTCTTTATTCAAATTTGAA
AATAAGTCGCTAT
>g13302.t10 Gene=g13302 Length=185
MRPQMIDKAKFLIEHFGFTASESLCAIEAKPPVPWNKGRASIYILRTAFGVDWSERIKII
YVGDDVTDEDAMMALRGMAATFRIASSNIIKTAAERRLPSTDSVLTMLKWIERHFMNKRP
RKISNNQRPKKVSSFNNNNSIGFPIHMSFDLTTSPSRSPRSSPLPSPSYSQESSSSNSSS
SSEES
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g13302.t10 | Gene3D | G3DSA:3.40.50.1000 | - | 5 | 125 | 3.0E-14 |
| 2 | g13302.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 185 | - |
| 1 | g13302.t10 | SUPERFAMILY | SSF56784 | HAD-like | 16 | 113 | 1.74E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed