General information for g13302.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trehalose-6-phosphate synthase beta].
Parent gene
- The parent gene g13302 is located on chr_1: 29013994..29015173 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13302 | g13302.t8 | TTS | g13302.t8 | 29010178 | 29010178 |
| chr_1 | g13302 | g13302.t8 | isoform | g13302.t8 | 29010236 | 29011415 |
| chr_1 | g13302 | g13302.t8 | exon | g13302.t8.exon1 | 29010236 | 29011209 |
| chr_1 | g13302 | g13302.t8 | cds | g13302.t8.CDS1 | 29011026 | 29011209 |
| chr_1 | g13302 | g13302.t8 | exon | g13302.t8.exon2 | 29011284 | 29011415 |
| chr_1 | g13302 | g13302.t8 | cds | g13302.t8.CDS2 | 29011284 | 29011339 |
| chr_1 | g13302 | g13302.t8 | TSS | g13302.t8 | NA | NA |
Sequences
>g13302.t8 Gene=g13302 Length=1106
GGTTTGTCATGATGGAGCTTGGGTAGAGAACAAAGGTGCCCTTTTGACTTTCCATTATCG
TGATACACCAAATGAAATGCGTCCACAAATGATTGACAAGGCAAAATTTTTGATTGAGCA
TTTTGGATTCACTGCAAGTGAATCACTATGTGCTATTGAAGCTAAGCCACCAGTCCCTTG
GAATAAAGGACGTGCTTCAATTTATATTCTTCGTACTGCATTTGGTGTTGATTGGAGTGA
GAGAATCAAAATTATTTACGTTGGAGATGACGTCACTGATGAGGACGCAATGATGGTAAA
TTCGAACAAATTTTAAAAAAAAATTCATCTAATTGGATTGACTCATTTTTCAAAATTTTT
TCAGTTTAAAGAACATCATTTTTTGAATATTTCCAAAAATGCTTTCTATACTCTTTATTC
TCTCGTATCTAGGCTCTACGAGGCATGGCAGCGACGTTCAGAATCGCAAGTTCCAATATT
ATTAAAACCGCAGCTGAACGCCGTTTGCCCTCCACCGATTCCGTTCTCACCATGTTAAAA
TGGATTGAGCGTCATTTTATGAATAAACGTCCACGTAAGATCTCAAATAATCAGCGACCA
AAGAAAGTTTCTTCATTTAACAATAACAATAGTATCGGTTTTCCTATCCATATGTCATTC
GACTTAACCACCTCCCCTTCAAGAAGTCCACGTTCATCTCCATTACCAAGCCCATCCTAT
AGTCAAGAAAGTAGCAGCAGTAACAGTAGCAGCAGCAGTGAAGAATCATAGAATTTCTTT
TTATTTAGTAAATTTTTAATTATCAATAATCTTGATAGGTTCAATAGAGTTTTTTTAATC
GTTCCTAATAATTTTTACAAATTTTCAATGAAATAATTTGATGAAATTCTAATATATATA
GAATTTTAATGTTATGCCAAAAATTTTTAAAATTAAATAATTATTATTGTCTCTTCTTTT
CTATTGGACATTCTAGACAATGCATAAAAATATTTTTCAAAACGAATTTTATAAATAAGG
CAAAAAAACTTAAATTTAAGGAGAAAAAATTTATTTCTGTGAATTATAAAATATTTCTTT
ATTCAAATTTGAAAATAAGTCGCTAT
>g13302.t8 Gene=g13302 Length=79
MRPQMIDKAKFLIEHFGFTASESLCAIEAKPPVPWNKGRASIYILRTAFGVDWSERIKII
YVGDDVTDEDAMMVNSNKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g13302.t8 | Gene3D | G3DSA:3.40.50.1000 | - | 4 | 79 | 1.00e-07 |
| 1 | g13302.t8 | Pfam | PF02358 | Trehalose-phosphatase | 13 | 73 | 1.30e-04 |
| 2 | g13302.t8 | SUPERFAMILY | SSF56784 | HAD-like | 15 | 74 | 8.93e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005992 | trehalose biosynthetic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
