General information for g13305.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13305 is located on chr_1: 29040202..29047736 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13305 | g13305.t2 | isoform | g13305.t2 | 29040202 | 29047736 |
| chr_1 | g13305 | g13305.t2 | exon | g13305.t2.exon1 | 29040202 | 29041357 |
| chr_1 | g13305 | g13305.t2 | cds | g13305.t2.CDS1 | 29040204 | 29041357 |
| chr_1 | g13305 | g13305.t2 | TTS | g13305.t2 | 29040224 | 29040224 |
| chr_1 | g13305 | g13305.t2 | exon | g13305.t2.exon2 | 29047694 | 29047736 |
| chr_1 | g13305 | g13305.t2 | cds | g13305.t2.CDS2 | 29047694 | 29047736 |
| chr_1 | g13305 | g13305.t2 | TSS | g13305.t2 | 29048038 | 29048038 |
Sequences
>g13305.t2 Gene=g13305 Length=1199
ATGGTTTTCTATGACACTGACAACGAACAATTGCCATCAGTCGACACACCAACTTCGAGT
TTGTCGAGGAAGTGGTGTAAATTGCGTCAACGTTGTGCGTCATTTCATGCGATGAAGACG
CTCGACTGCACATCGGCCGAGGGGCCATCTTCACTGCCTTATCAATTTTATGATAACGGT
ATGCTTGAAGTGACGACCCCACTACACGCACAAATGCCACATCATAGTAATAATTTCATC
TTAGCACACGACCCGCGCGCTCTAATGGACAATAAGCCAAAGATTTATGCTGTCATTGAT
GGTCGTAATGGTGGCTATTATACTACCGCTGCCAACTATCCTCTAATGTATGAGCCTATC
ATTGAACATCCAAAAATACAGAAAGTGTGTAAATGCAAGCACAATAAAACTTCTGCATCT
ACGACATCACTGAGCTATGATATGAGTGAGTCAACACAGTTCATGCACGTGCTGAATCAA
CAAACACGTCTACAATATTTCGATGGTGAAGATTTGAAAGCCAAATCAAAAACACGTCGT
CTAAGTCTCTTCGGCAGTGAAAGAAAGCCAAAGAAAGAAACGGCAAAGAATTTTGATATT
AAACAATTTAAATCAGTTTCTATGCGATGTCATCATCATCATCAACATCTTATGTATATA
AGAGAACAACAAATGTTGCAACAACAACAGCAGCAGCAACAGGAAGCTGAAAAGCAAGCT
CAATCAACTAAAAGCACAATGAAAATGAAATTTAATACTGTAGGTCGAAAGAAGAGATCA
ATCTACGATGTTTTCTTTAATAACAATAGCAGCAAAACACCAGCATCATCGTCATCATCG
AATGAACCAAATCTTAGACAACCGACATTTTACGTTCCATTACCAGATAAAGTAATTAAC
GATAACGAATTGCAGCATCATCATCATCGAAATAATAGTGTGAATCCGATTCGCTCGATT
CGTTCGCGTTCCGTTTGTGCAGGCGAGAGTAGTCAACAGATGCTCTTTCACAATGTCGAC
AATAGTCAGCATCAACAGAAAGAGCAAAAGAGTGAACGACGAAAATCAAATAGCTTCAAT
CCACGCGAATCACTCGAAATCACTTCATTTCTATTTAGCAAGCTCAAGATGGATCGCAAG
GCAGATGGAAGTGAAAAATGTGAGCAACAAGGCGACGAAATAAAGAAAAATGATAAACG
>g13305.t2 Gene=g13305 Length=399
MVFYDTDNEQLPSVDTPTSSLSRKWCKLRQRCASFHAMKTLDCTSAEGPSSLPYQFYDNG
MLEVTTPLHAQMPHHSNNFILAHDPRALMDNKPKIYAVIDGRNGGYYTTAANYPLMYEPI
IEHPKIQKVCKCKHNKTSASTTSLSYDMSESTQFMHVLNQQTRLQYFDGEDLKAKSKTRR
LSLFGSERKPKKETAKNFDIKQFKSVSMRCHHHHQHLMYIREQQMLQQQQQQQQEAEKQA
QSTKSTMKMKFNTVGRKKRSIYDVFFNNNSSKTPASSSSSNEPNLRQPTFYVPLPDKVIN
DNELQHHHHRNNSVNPIRSIRSRSVCAGESSQQMLFHNVDNSQHQQKEQKSERRKSNSFN
PRESLEITSFLFSKLKMDRKADGSEKCEQQGDEIKKNDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13305.t2 | Coils | Coil | Coil | 219 | 246 | - |
| 1 | g13305.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 250 | - |
| 2 | g13305.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 253 | - |
| 5 | g13305.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 364 | - |
| 3 | g13305.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 360 | - |
| 4 | g13305.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 399 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
