General information for g13332.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription factor hamlet.
Parent gene
- The parent gene g13332 is located on chr_1: 29327578..29328932 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13332 | g13332.t1 | isoform | g13332.t1 | 29286464 | 29328596 |
| chr_1 | g13332 | g13332.t1 | exon | g13332.t1.exon1 | 29286464 | 29286896 |
| chr_1 | g13332 | g13332.t1 | cds | g13332.t1.CDS1 | 29286464 | 29286896 |
| chr_1 | g13332 | g13332.t1 | exon | g13332.t1.exon2 | 29286985 | 29287139 |
| chr_1 | g13332 | g13332.t1 | cds | g13332.t1.CDS2 | 29286985 | 29287139 |
| chr_1 | g13332 | g13332.t1 | exon | g13332.t1.exon3 | 29294612 | 29294768 |
| chr_1 | g13332 | g13332.t1 | cds | g13332.t1.CDS3 | 29294612 | 29294768 |
| chr_1 | g13332 | g13332.t1 | exon | g13332.t1.exon4 | 29308194 | 29308374 |
| chr_1 | g13332 | g13332.t1 | cds | g13332.t1.CDS4 | 29308194 | 29308374 |
| chr_1 | g13332 | g13332.t1 | exon | g13332.t1.exon5 | 29316855 | 29316969 |
| chr_1 | g13332 | g13332.t1 | cds | g13332.t1.CDS5 | 29316855 | 29316969 |
| chr_1 | g13332 | g13332.t1 | exon | g13332.t1.exon6 | 29317039 | 29317167 |
| chr_1 | g13332 | g13332.t1 | cds | g13332.t1.CDS6 | 29317039 | 29317167 |
| chr_1 | g13332 | g13332.t1 | exon | g13332.t1.exon7 | 29325950 | 29326126 |
| chr_1 | g13332 | g13332.t1 | cds | g13332.t1.CDS7 | 29325950 | 29326126 |
| chr_1 | g13332 | g13332.t1 | exon | g13332.t1.exon8 | 29326503 | 29326630 |
| chr_1 | g13332 | g13332.t1 | cds | g13332.t1.CDS8 | 29326503 | 29326630 |
| chr_1 | g13332 | g13332.t1 | exon | g13332.t1.exon9 | 29328569 | 29328596 |
| chr_1 | g13332 | g13332.t1 | cds | g13332.t1.CDS9 | 29328569 | 29328596 |
| chr_1 | g13332 | g13332.t1 | TSS | g13332.t1 | 29328932 | 29328932 |
| chr_1 | g13332 | g13332.t1 | TTS | g13332.t1 | NA | NA |
Sequences
>g13332.t1 Gene=g13332 Length=1503
ATGTTTGATTACGGATTAATGATGCCAGGAAGCAGTGGAGAAGAATCAGATTCATCGCGT
GGAATTCCATCAAGTTTAGATATACCGCGAGCTCTTCAAGTTATTCCACTTAGTCCTAGT
GATTTATATTATAAAAAAGACAACAGTGATAAAAGACTCACAAGCGAATATTTACTGGAA
GAAATGTCGCGATTTCTGCACGATCAAACAAAAAACTTAGAAATACGCAACGGTGCTGTG
TTTGCGAAAGCAAAAATCAACAAGGGAACGAAATTTGGGCCATTCATAGCAAAGTTTACG
GATAAGCCACTTGATCGACGCTTTGCATGGGAGATAATAGCATCACCAAGTTTAAAAGGA
TGGTATGATGCATCAACAGAAACATCAAATTGGATGAAAAATATCAGAAGCTCAGAAGAT
AACAAAAATATAAATATTCAACATATTTTTATTAATGGTCAAATTTGGTATGAAGCAATA
TGTGATATATCACAAGATACTGAATTATTATTAGGACCAAAAGTTCCTTTATTAATCAAT
GATATGAGAAGTGAAAATGATGATCGTTCAGGCTCTGGTTCGCAGCATAGTGGCGCGTAC
GAAGAAGACTTTAATGCTTCATCGAATGATTTAGACAGCAATCAACAGGAATCTACACAT
GAGAATAATAATGAGTCCATTGAAGATGAAGATGACGATGTTGATGGCATAGATGCACGT
TGTATTGTATGCGAACGTCAGTGTGGAGATATTGATCAATTAGACGCTCATTTAGTAGCA
TCACATCATTATCCAAGAGATTCATTCCATTGTGAACTTTGTCCAAAGAAATATTGTTAT
CGACCAATTTTATTGCGACATCGAGCTCTATCACACGGTGAATTCAGAAAATATCCGTGC
GAAAATTGCTCAAAGGAATTTACTGATCCATCAAATCTTCAACGACATATACGAACACAT
CACGTGGGCGCACGCAGTCACGCTTGTCCCGAGTGTGGCAAAACATTTGCAACATCATCA
GGATTGAAGCAGCACACTCACATTCATATCATCAGTGAAGCCATTCCAGTTGCAACAAGT
GGTGGACAAAGTTTAAGCAGTTTACATCATTATCGAAACACAAGCGTTTTTGTGACTCAA
CAAATAGTGGCAGTAATCTCGTTGGCAATCAACCATCATCACAGACACAACATCAAAATT
TCAACAACAACAGCAATGACAACACCACCTAATCCATTTTTGATGTTCCGCAACTCGCCA
TTCTTTCCACCTGGCATGGCATCATATCAGGATTACAAGGAATTTTTCCACCAGTCCGCT
CAAGCACCGCATTTTCCTTTATTTTTACCAAAGCATCATTTTGAAATGCCATGTTTGGAT
TTGACAGCACGACACCAACAAAAAACTAACAACAAATGTCACCATCACAAGCTGATGAAG
CATCAACTAATTTGCGACCATCACCAGCTCGACCAGCACTTTGAGTGTCAGAACCTCATT
TAA
>g13332.t1 Gene=g13332 Length=500
MFDYGLMMPGSSGEESDSSRGIPSSLDIPRALQVIPLSPSDLYYKKDNSDKRLTSEYLLE
EMSRFLHDQTKNLEIRNGAVFAKAKINKGTKFGPFIAKFTDKPLDRRFAWEIIASPSLKG
WYDASTETSNWMKNIRSSEDNKNINIQHIFINGQIWYEAICDISQDTELLLGPKVPLLIN
DMRSENDDRSGSGSQHSGAYEEDFNASSNDLDSNQQESTHENNNESIEDEDDDVDGIDAR
CIVCERQCGDIDQLDAHLVASHHYPRDSFHCELCPKKYCYRPILLRHRALSHGEFRKYPC
ENCSKEFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHIISEAIPVATS
GGQSLSSLHHYRNTSVFVTQQIVAVISLAINHHHRHNIKISTTTAMTTPPNPFLMFRNSP
FFPPGMASYQDYKEFFHQSAQAPHFPLFLPKHHFEMPCLDLTARHQQKTNNKCHHHKLMK
HQLICDHHQLDQHFECQNLI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g13332.t1 | CDD | cd19201 | PR-SET_ZFPM | 53 | 178 | 2.30672E-32 |
| 9 | g13332.t1 | Gene3D | G3DSA:2.170.270.10 | SET domain | 46 | 176 | 5.6E-20 |
| 8 | g13332.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 204 | 296 | 1.6E-6 |
| 6 | g13332.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 297 | 320 | 6.3E-10 |
| 7 | g13332.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 321 | 350 | 5.8E-7 |
| 19 | g13332.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - |
| 17 | g13332.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 232 | - |
| 18 | g13332.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 221 | - |
| 3 | g13332.t1 | PANTHER | PTHR24393 | ZINC FINGER PROTEIN | 240 | 349 | 5.0E-37 |
| 4 | g13332.t1 | PANTHER | PTHR24393:SF69 | HISTONE-LYSINE N-METHYLTRANSFERASE MECOM | 240 | 349 | 5.0E-37 |
| 1 | g13332.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 298 | 320 | 2.9E-7 |
| 2 | g13332.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 327 | 349 | 3.2E-4 |
| 12 | g13332.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 300 | 321 | - |
| 11 | g13332.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 329 | 349 | - |
| 22 | g13332.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 269 | 297 | 8.767 |
| 21 | g13332.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 298 | 326 | 13.588 |
| 20 | g13332.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 327 | 354 | 11.905 |
| 14 | g13332.t1 | SMART | SM00355 | c2h2final6 | 239 | 262 | 5.7 |
| 15 | g13332.t1 | SMART | SM00355 | c2h2final6 | 269 | 292 | 1.4 |
| 13 | g13332.t1 | SMART | SM00355 | c2h2final6 | 298 | 320 | 1.0E-4 |
| 16 | g13332.t1 | SMART | SM00355 | c2h2final6 | 327 | 349 | 0.0021 |
| 5 | g13332.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 296 | 349 | 4.2E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
