General information for g13333.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Solute carrier family 26 member 6.
Parent gene
- The parent gene g13333 is located on chr_1: 29357531..29358434 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13333 | g13333.t1 | isoform | g13333.t1 | 29356097 | 29358313 |
| chr_1 | g13333 | g13333.t1 | exon | g13333.t1.exon1 | 29356097 | 29356256 |
| chr_1 | g13333 | g13333.t1 | cds | g13333.t1.CDS1 | 29356097 | 29356256 |
| chr_1 | g13333 | g13333.t1 | exon | g13333.t1.exon2 | 29356324 | 29357457 |
| chr_1 | g13333 | g13333.t1 | cds | g13333.t1.CDS2 | 29356324 | 29357457 |
| chr_1 | g13333 | g13333.t1 | exon | g13333.t1.exon3 | 29357520 | 29358313 |
| chr_1 | g13333 | g13333.t1 | cds | g13333.t1.CDS3 | 29357520 | 29358313 |
| chr_1 | g13333 | g13333.t1 | TTS | g13333.t1 | 29358416 | 29358416 |
| chr_1 | g13333 | g13333.t1 | TSS | g13333.t1 | NA | NA |
Sequences
>g13333.t1 Gene=g13333 Length=2088
ATGACTATTGGAGGTCTAAAAATTTGCAGCAGACGAAATTCACCAATAAGTATGATAGAA
GTTGAAAAAGCATCAATGCTTGATTTTGAGATCAAAAGAAGAATCATAAGACAAGAAGAC
CTAGAAGATGTCACGGGCTATGACCGTCATAAAAATACGCCTACAGAATCATTTGCAGCT
ACATTAAAAAGCTTTAGTATAAAAGATGCAGTTTTTGATACGATTCCTGTTTTAAAGTGG
TTTCCAAAATATTCGATCAAAAATAACCTGATTGGAGATCTTGTTGCAGGATTTACTGTT
GCTATAATGCATATTCCTCAAGGCATGGCTTACGGTTTACTTGCTGGATTAGATCCAATT
GTTGGTCTGTACATGGCATTCTTTCCAACTCTAGTCTATTTTATTTTTGGAACTTCACGA
CATGTCAGCACTGGAACATTTGCAGTTGTCTCAATTATGACTTCAAAAATTGTTGCAACT
TATTCATCTGTTGGTGCAGAAAGTAAAGGAATTACGGATATAAATGAGCCAAGTTATACA
AATTATCAAGTCGCAACTGCAGTTACAATGGTTTGTGGAATTTTTCAAATTGCAATGTGC
TTCTTCAGACTTGGAGCTCTTGCATCATTATTATCACAGTCACTCGTTAGTGGCTTCACA
ACAGCAGCTGCTGTTCATGTTATTGTAGCTCAATCAAAAGATTTACTTGGTGTTACATTG
CCCAGACATAAAGGTGCCTTCAAAATTATTTTCTCTATTCGTGACATTATCTTGAATTTA
TCAACATCGAATATTTATACAATTTTTGTCTCAATTGGTTGCATTTCATTTATGATTTTA
ATGAATGAAATTGTAAAACCTTGGGCAGCTAAAAGGTGCAAATTTCCATTGCCTTCTGAA
CTCATGGCAGTTATTGGATTTACTGCAATTTCTTATGCTTTAAATCTTGGTGGATCTGAT
TACAAAGTTAAAGAAGTAGGTAAAATTCCCACGGGATTGCCAATGCCTGAATTTCCACCA
TTTGAATTACTTGGACTAGTCGCTATTGACTCAATTGCAGTCTGTATTGTTAGTGTTTCA
ATTGTTATCAGCATGGCATTAATATTTGCAAAGAAAGACAGCTATGAAGTTCGTGCCAAT
CAAGAGTTGCTAGCTTTGGGACTTTCGAATATTGTTGGTTCATGCTTTTCGTGCATTCCA
CTGTCAGTTTCACTTTCACGTTCAATTATTCAACATCAAACAGGTGGAAAAACTCAATTT
GCATCTGTCGTATCAGCTGGTTTAATTCTAATTCTTTTGCTTTGGGTTGGACCATTGTTT
GAAACTTTACCTCGTGCTACACTCGCTGGAATCATCATTGTTGCTCTTAAAGGAATGATT
TTACAAATTGGTGACTTAAAGAAATTTTATCGTGAAAGTGTTCTTGACGTTGCTGTTTGG
ATTGCAACATTTTTGACTGTTGTCATTATTGACATAGATATTGGACTTTTGACTGGCGTT
TGTGTATCATTTATTGCATTATATATCAAAGGATTCAAAAGTTATTCATGCTTACTCGGT
CAAGTATCAAATACAGAAATTTATGTCGATGTTGCCAATCATAAAAATGTTACTGAAGTT
CCTGGCGTTAAAATTTTCCGTTACTATGGTTCAGTAAATTTCGCAACAAGCGCTGGCTTT
AAAAAAGAACTTTTTGATAAAATTGGAATCAACCATAAAATTATTAGAAGAGCTTCATTG
TGTGGAAATAAAAATGACAATAAAAATTCAACATTGAAAGGATCAGTTTCATATATTAGA
GATGCAGTTGAAATTGAAGGTCAATCAGAAGCAAAAAGTTTAAAATGCAATCTAAATTCA
CTAATTATTGACCTCAGTTGCATGCCACATATCGATATGAGCGGATATAGAACATTTCTA
GAAATTCGTAATGAAATGAAACTTCTTGATATTAAAGTTCTTCTCACAAGTCCCAGTGAT
TGTGTTTACGACTCATTAAGACGTGCAGTAAAAATTGGCGAGCAATCTTTTGAATGTTTT
CCATCAATTCATGACGCCGTGATTTACTCAAATAAAATACAACAGTAG
>g13333.t1 Gene=g13333 Length=695
MTIGGLKICSRRNSPISMIEVEKASMLDFEIKRRIIRQEDLEDVTGYDRHKNTPTESFAA
TLKSFSIKDAVFDTIPVLKWFPKYSIKNNLIGDLVAGFTVAIMHIPQGMAYGLLAGLDPI
VGLYMAFFPTLVYFIFGTSRHVSTGTFAVVSIMTSKIVATYSSVGAESKGITDINEPSYT
NYQVATAVTMVCGIFQIAMCFFRLGALASLLSQSLVSGFTTAAAVHVIVAQSKDLLGVTL
PRHKGAFKIIFSIRDIILNLSTSNIYTIFVSIGCISFMILMNEIVKPWAAKRCKFPLPSE
LMAVIGFTAISYALNLGGSDYKVKEVGKIPTGLPMPEFPPFELLGLVAIDSIAVCIVSVS
IVISMALIFAKKDSYEVRANQELLALGLSNIVGSCFSCIPLSVSLSRSIIQHQTGGKTQF
ASVVSAGLILILLLWVGPLFETLPRATLAGIIIVALKGMILQIGDLKKFYRESVLDVAVW
IATFLTVVIIDIDIGLLTGVCVSFIALYIKGFKSYSCLLGQVSNTEIYVDVANHKNVTEV
PGVKIFRYYGSVNFATSAGFKKELFDKIGINHKIIRRASLCGNKNDNKNSTLKGSVSYIR
DAVEIEGQSEAKSLKCNLNSLIIDLSCMPHIDMSGYRTFLEIRNEMKLLDIKVLLTSPSD
CVYDSLRRAVKIGEQSFECFPSIHDAVIYSNKIQQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 33 | g13333.t1 | CDD | cd07042 | STAS_SulP_like_sulfate_transporter | 534 | 677 | 6.08131E-12 |
| 3 | g13333.t1 | PANTHER | PTHR11814 | SULFATE TRANSPORTER | 28 | 166 | 1.5E-247 |
| 5 | g13333.t1 | PANTHER | PTHR11814:SF189 | FI18412P1 | 28 | 166 | 1.5E-247 |
| 4 | g13333.t1 | PANTHER | PTHR11814 | SULFATE TRANSPORTER | 179 | 692 | 1.5E-247 |
| 6 | g13333.t1 | PANTHER | PTHR11814:SF189 | FI18412P1 | 179 | 692 | 1.5E-247 |
| 1 | g13333.t1 | Pfam | PF00916 | Sulfate permease family | 90 | 483 | 2.7E-100 |
| 2 | g13333.t1 | Pfam | PF01740 | STAS domain | 535 | 686 | 4.2E-19 |
| 10 | g13333.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 89 | - |
| 23 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 90 | 114 | - |
| 20 | g13333.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 115 | 119 | - |
| 25 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 120 | 138 | - |
| 11 | g13333.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 139 | 144 | - |
| 29 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 145 | 164 | - |
| 16 | g13333.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 165 | 183 | - |
| 26 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 184 | 202 | - |
| 14 | g13333.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 203 | 213 | - |
| 30 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 214 | 232 | - |
| 19 | g13333.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 233 | 264 | - |
| 24 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 265 | 285 | - |
| 9 | g13333.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 286 | 296 | - |
| 21 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 297 | 314 | - |
| 17 | g13333.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 315 | 342 | - |
| 31 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 343 | 370 | - |
| 13 | g13333.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 371 | 381 | - |
| 27 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 382 | 403 | - |
| 15 | g13333.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 404 | 422 | - |
| 28 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 423 | 440 | - |
| 8 | g13333.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 441 | 446 | - |
| 22 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 447 | 465 | - |
| 18 | g13333.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 466 | 476 | - |
| 32 | g13333.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 477 | 509 | - |
| 12 | g13333.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 510 | 695 | - |
| 46 | g13333.t1 | ProSiteProfiles | PS50801 | STAS domain profile. | 533 | 690 | 19.029 |
| 7 | g13333.t1 | SUPERFAMILY | SSF52091 | SpoIIaa-like | 536 | 686 | 3.92E-12 |
| 47 | g13333.t1 | TIGRFAM | TIGR00815 | sulP: sulfate permease | 76 | 686 | 1.2E-137 |
| 38 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
| 45 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 120 | 137 | - |
| 34 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 142 | 164 | - |
| 41 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 179 | 201 | - |
| 40 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 208 | 230 | - |
| 44 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 265 | 282 | - |
| 43 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 295 | 317 | - |
| 39 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 348 | 370 | - |
| 36 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 383 | 405 | - |
| 35 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 420 | 439 | - |
| 42 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 446 | 463 | - |
| 37 | g13333.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 478 | 509 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0015116 | sulfate transmembrane transporter activity | MF |
| GO:0008272 | sulfate transport | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0008271 | secondary active sulfate transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K14453 (solute carrier family 26, other)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
