General information for g13344.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 5-demethoxyubiquinone hydroxylase, mitochondrial.
Parent gene
- The parent gene g13344 is located on chr_1: 29384211..29385438 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13344 | g13344.t3 | isoform | g13344.t3 | 29384163 | 29385438 |
| chr_1 | g13344 | g13344.t3 | exon | g13344.t3.exon1 | 29384163 | 29384799 |
| chr_1 | g13344 | g13344.t3 | TTS | g13344.t3 | 29384185 | 29384185 |
| chr_1 | g13344 | g13344.t3 | cds | g13344.t3.CDS1 | 29384211 | 29384798 |
| chr_1 | g13344 | g13344.t3 | exon | g13344.t3.exon2 | 29385356 | 29385438 |
| chr_1 | g13344 | g13344.t3 | TSS | g13344.t3 | 29385448 | 29385448 |
Sequences
>g13344.t3 Gene=g13344 Length=720
TAAAAACATTGGAAAATTGTGAAATAAAAATAAATTTTATTTTTCACTCTTTTTACAAGG
AATAAAAGAAAAACAAAGTTTAAAATGTTTTCTGCTCAAAGATCAATCTTAAATCTTATG
TTGAGAAGAAGTATGTCTCAACATACATCAAGACCATCAAAAATTGTCGATAAGTTTCTT
CGAGTCAATCATGCAGGCGAACTTGGAGCGGATCGTATTTATGAAGGACAATTAGCAGTA
TTAGGAAACACAAAAGTAGGACCTACTATTAAACATATGTGGGAACAAGAAAAAGCTCAT
CGAGAAGAATTTGAAAAACTCATCAGAAAGCATCGTGTAAGACCAACAGTTTTAACACCA
ATTTGGAATGTAGCTGGTTTTGCATTAGGCGCAGTAACAGCATTAATGGGCGAAAAAGCA
GCATTTGCATGTACAGTTGCAGTCGAAACAGTTATAGTCGAACATTACAACGACCAAGTG
AGGCAACTAATGGAAGATCCAAATACAAATAAGGAACTAATAGAACTTATAAAAAAATTC
AGAGATGAAGAACAGGAACATCATGATTGTGGTATTGACCATGGTGCAGAACAAGCTCCT
TTCTATGACGCGTTATCGAATGTTATTAAATTTGGTTGCAAAACAGCCATTAAAATTTCA
GAAAAAATATAAATTTAAATTTATGTATAATAGTTTATAAAATGTATGTGTTTTTCTTAC
>g13344.t3 Gene=g13344 Length=195
MFSAQRSILNLMLRRSMSQHTSRPSKIVDKFLRVNHAGELGADRIYEGQLAVLGNTKVGP
TIKHMWEQEKAHREEFEKLIRKHRVRPTVLTPIWNVAGFALGAVTALMGEKAAFACTVAV
ETVIVEHYNDQVRQLMEDPNTNKELIELIKKFRDEEQEHHDCGIDHGAEQAPFYDALSNV
IKFGCKTAIKISEKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13344.t3 | CDD | cd01042 | DMQH | 28 | 194 | 0.00000 |
| 3 | g13344.t3 | Hamap | MF_01658 | 3-demethoxyubiquinol 3-hydroxylase [coq7]. | 1 | 195 | 31.34884 |
| 2 | g13344.t3 | PANTHER | PTHR11237 | COENZYME Q10 BIOSYNTHESIS PROTEIN 7 | 18 | 195 | 0.00000 |
| 1 | g13344.t3 | Pfam | PF03232 | Ubiquinone biosynthesis protein COQ7 | 28 | 195 | 0.00000 |
| 4 | g13344.t3 | SUPERFAMILY | SSF47240 | Ferritin-like | 29 | 162 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006744 | ubiquinone biosynthetic process | BP |
| GO:0004497 | monooxygenase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K06134 (3-demethoxyubiquinol 3-hydroxylase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
