General information for g13346.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13346 is located on chr_1: 29391016..29391553 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13346 | g13346.t11 | isoform | g13346.t11 | 29390343 | 29390938 |
| chr_1 | g13346 | g13346.t11 | exon | g13346.t11.exon1 | 29390343 | 29390727 |
| chr_1 | g13346 | g13346.t11 | cds | g13346.t11.CDS1 | 29390458 | 29390727 |
| chr_1 | g13346 | g13346.t11 | exon | g13346.t11.exon2 | 29390789 | 29390938 |
| chr_1 | g13346 | g13346.t11 | cds | g13346.t11.CDS2 | 29390789 | 29390938 |
| chr_1 | g13346 | g13346.t11 | TTS | g13346.t11 | 29391109 | 29391109 |
| chr_1 | g13346 | g13346.t11 | TSS | g13346.t11 | NA | NA |
Sequences
>g13346.t11 Gene=g13346 Length=535
AATTAATAATGCTTTGGATTCAAAGCCATTACCGTTGCCACGTGCAGCAACAGCAGCAGA
ACCAATTGTCTCACTCAATATTGACGATGAGTTACGTTCAAACAATAAAAACAACATGTC
ACCAACATCACTCAAGGGCGAGAAAGCAGAAAAAGAAAACATTTTCTCAAAGAAATGGAA
AAACTTTAGAAAAGAGCACACGCCAAATAAAAATGAAAGTGAATCGATAAAAAATCAATA
TAATAAATCATCAACAGGCAGTGGTAATGGAGGTGAAAGAATTATAATTGGAGGTGATAA
TGCTTTCAATTCACAGTCATATGTTGAGAAAAAAATTGATTTGCCAAAAGAAGTGCTCGC
AAAATATGATGGAAAATCAAAAGAGGAAATAATGAAGATTGCTCATAATCTTGAAGGCGA
TTTGATTCAACAGAGACAAAAGAACAAGGAACTGGAAGAATATCTCGATATATTGTTATT
GAAGGTCATGGAAACTCATCCAAAAATATTGCAAAATCCTTATATCAATTCGCAG
>g13346.t11 Gene=g13346 Length=140
MSPTSLKGEKAEKENIFSKKWKNFRKEHTPNKNESESIKNQYNKSSTGSGNGGERIIIGG
DNAFNSQSYVEKKIDLPKEVLAKYDGKSKEEIMKIAHNLEGDLIQQRQKNKELEEYLDIL
LLKVMETHPKILQNPYINSQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13346.t11 | Coils | Coil | Coil | 96 | 116 | - |
| 5 | g13346.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - |
| 4 | g13346.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 34 | - |
| 3 | g13346.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 51 | - |
| 1 | g13346.t11 | Pfam | PF09457 | FIP domain | 88 | 135 | 3.3E-12 |
| 7 | g13346.t11 | ProSiteProfiles | PS51511 | FIP-RBD domain profile. | 73 | 135 | 12.047 |
| 2 | g13346.t11 | SUPERFAMILY | SSF144270 | Eferin C-derminal domain-like | 106 | 136 | 2.75E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
