General information for g13346.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13346 is located on chr_1: 29391016..29391553 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13346 | g13346.t8 | isoform | g13346.t8 | 29389848 | 29390934 |
| chr_1 | g13346 | g13346.t8 | exon | g13346.t8.exon1 | 29389848 | 29389854 |
| chr_1 | g13346 | g13346.t8 | exon | g13346.t8.exon2 | 29389914 | 29390727 |
| chr_1 | g13346 | g13346.t8 | cds | g13346.t8.CDS1 | 29390458 | 29390727 |
| chr_1 | g13346 | g13346.t8 | exon | g13346.t8.exon3 | 29390789 | 29390934 |
| chr_1 | g13346 | g13346.t8 | cds | g13346.t8.CDS2 | 29390789 | 29390932 |
| chr_1 | g13346 | g13346.t8 | TTS | g13346.t8 | 29391109 | 29391109 |
| chr_1 | g13346 | g13346.t8 | TSS | g13346.t8 | NA | NA |
Sequences
>g13346.t8 Gene=g13346 Length=967
ATGAAGATGAATTTGCTTTCGAGAATTTGTCTCATAAAAGTTCATCAAATTCTCTCAACG
TTCGACAAAAGAATAATAACTTAATTTTGACAAAACAAGAAGATTTATCGACTCCAGTTG
CTACACTGCGTGAAAGTGCCACACTTCCGCAGTTGAGTAAGCCATCAACGAAAAATGTTC
ACGAGACGCCAACAAAAGAATCATCTAAAGTGGATGAGTGGGAAGCGAAATTGTATGGGA
AAAATGTAGAAATTGGACATAGTACTGACTCACTTAAACGACGATCGTGGGAAAATTCTC
GCGTTCCATTCAATAATTCAGAACATGAGTTAAAAGAGAAAGAACGTGAACCAACAATTC
AAGAACAATCATTAGAACGTGTATCTTTGGACTTTGCTTCAACTGCACCAGCTTCGCCTG
AGCTTAATACTAAAAAAATTAATAATGCTTTGGATTCAAAGCCATTACCGTTGCCACGTG
CAGCAACAGCAGCAGAACCAATTGTCTCACTCAATATTGACGATGAGTTACGTTCAAACA
ATAAAAACAACATGTCACCAACATCACTCAAGGGCGAGAAAGCAGAAAAAGAAAACATTT
TCTCAAAGAAATGGAAAAACTTTAGAAAAGAGCACACGCCAAATAAAAATGAAAGTGAAT
CGATAAAAAATCAATATAATAAATCATCAACAGGCAGTGGTAATGGAGGTGAAAGAATTA
TAATTGGAGGTGATAATGCTTTCAATTCACAGTCATATGTTGAGAAAAAAATTGATTTGC
CAAAAGAAGTGCTCGCAAAATATGATGGAAAATCAAAAGAGGAAATAATGAAGATTGCTC
ATAATCTTGAAGGCGATTTGATTCAACAGAGACAAAAGAACAAGGAACTGGAAGAATATC
TCGATATATTGTTATTGAAGGTCATGGAAACTCATCCAAAAATATTGCAAAATCCTTATA
TCAATTC
>g13346.t8 Gene=g13346 Length=138
MSPTSLKGEKAEKENIFSKKWKNFRKEHTPNKNESESIKNQYNKSSTGSGNGGERIIIGG
DNAFNSQSYVEKKIDLPKEVLAKYDGKSKEEIMKIAHNLEGDLIQQRQKNKELEEYLDIL
LLKVMETHPKILQNPYIN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13346.t8 | Coils | Coil | Coil | 96 | 116 | - |
| 5 | g13346.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - |
| 4 | g13346.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 34 | - |
| 3 | g13346.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 51 | - |
| 1 | g13346.t8 | Pfam | PF09457 | FIP domain | 88 | 135 | 3.2E-12 |
| 7 | g13346.t8 | ProSiteProfiles | PS51511 | FIP-RBD domain profile. | 73 | 135 | 12.047 |
| 2 | g13346.t8 | SUPERFAMILY | SSF144270 | Eferin C-derminal domain-like | 106 | 136 | 2.75E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
