Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13353 g13353.t1 TTS g13353.t1 29479767 29479767
chr_1 g13353 g13353.t1 isoform g13353.t1 29480194 29484787
chr_1 g13353 g13353.t1 exon g13353.t1.exon1 29480194 29480901
chr_1 g13353 g13353.t1 cds g13353.t1.CDS1 29480194 29480901
chr_1 g13353 g13353.t1 exon g13353.t1.exon2 29480973 29481080
chr_1 g13353 g13353.t1 cds g13353.t1.CDS2 29480973 29481080
chr_1 g13353 g13353.t1 exon g13353.t1.exon3 29481960 29482255
chr_1 g13353 g13353.t1 cds g13353.t1.CDS3 29481960 29482255
chr_1 g13353 g13353.t1 exon g13353.t1.exon4 29482315 29483573
chr_1 g13353 g13353.t1 cds g13353.t1.CDS4 29482315 29483573
chr_1 g13353 g13353.t1 exon g13353.t1.exon5 29484681 29484787
chr_1 g13353 g13353.t1 cds g13353.t1.CDS5 29484681 29484787
chr_1 g13353 g13353.t1 TSS g13353.t1 29484998 29484998

Sequences

>g13353.t1 Gene=g13353 Length=2478
ATGAGTGTAATTGGAATCGATTTTGGTAACGAATCATGCTATATAGCAGTCGCCAAAGCT
GGTGGAATAGAGACTATAACAAATGACTACAGCTTGAGAGCAACACCATCATGTGTAGCA
TTTACCGGAAAAAATCGAACTTTAGGTGTTGCGGCAAAGAACCAACAAGTGACAAATATG
AAAAACACAATTTGTGGATTCAAACACCTATTAGGAAGAAAATTTAGAGATCCAGTTGTA
CAAAATGAGTTAAATTCTATACCTTATCGAGTAGAAGAGCGTCCAGATGGCTCTATTGGA
ATTTGCGCAAATTATATGGATGAAGATCAATCTTTTACTCCAGAACAAATCACTGCGATG
CTCTTTACCAAACTTAAAATTGATGCTACAGATGCTTTAAAAACACAAATTTATGATTGT
GTCATTACGGTTCCATCATATTTTACAAATGCTCAGAGAAAAGCATTGCTTGATGCTGCT
GGTATTGCTGGTCTTAATTGTTTACGTTTAATGAATGAAACCACTGCTACTGCTTTGGGT
TATGGTTTTTATAAGCAAGATTTACCTGCACCCGAGGAAAAACCACGAAATGTAATTTTT
GTCGACTTTGGACATAGTGCTATTCAAGTTTCGGCTTGTGCTTTCAACAAAGGAAAATTG
AAGATGCTTGCATCTGCATCTGATCTCGTTGGTGGTCGCGATGTTGACTCAATGCTAGCC
AATCATTTTAGTAACGAGTTTGTAACAAAGTACAAGGTTGATCCACGTACTAATAAAAAA
GCTTATTTGCGTCTGTTGACCGAAGTTGAAAAACTTAAAAAGCAAATGAGTGCAAACAGC
ACGAAATTGCCTTTAAGTATTGAGTGCTTCATGAATGATACAGACGTTCATTCATCAATT
CAACGTAGTGACATGGAAGAGATTTGTACTTCTCTTTTCCAACGAATTGAAGCTTGCATG
AAACGTTGTCTCAAAGACTCAAAGTTGACATTAGAAGATATTCATGCTGTTGAAATCGTT
GGTGGCTCAAGTCGCATTCCAGCAGTTAAACATCTCATAGAACAAATATTTGGCAAAACA
CCAAGCACACAATTGAATCAAGATGAAGCTGTTTCTCGGGGAGGTGCTCTTCAATGTGCA
GTCTTATCGCCAGCTGTTCGTGTTAAAGATTTTAATATAGTTGATATTCAACCTTTTACT
GTTATGCTATCATTTGATAATGAAAATGGTCAGCGTACTGAGATGGAAGTATTTCCTGCT
AATCATGCTTCTCCTTTTAGTCGTCTTTTGACAATGTATCGACGTGATCCTTTTGCTATT
AAATTGTATTATGCTGATCCAGCACCTTGCATTGATCCATTTATCGGAGAATGGCAAATC
AAAGATGTCAAACCATCAGCAACTGGTGAAGCACAAGAAGTAAAAGTCAAAGTTAGAATC
AATCATAATGGTTTATTGCTTGTTGCTAGCGCTCAAATGGTTGAAAAGAAGGATGTTCAG
GAAGCAGAACAAAATGGTAATGAAACAGAATCAACACAACAACAACAACAATCTTCAACG
CCACAATCTCCAAATGAACAACCTTCAAATCCTGATTCTCAAAATACTACCGCTTCATCT
GGCACAGAACCAATGGATACAACTCCTCCTAGCAATAATGAGGATGATAAAAAGAAAAAG
AAGTCCAGTAATAAGATAGTTGAGTTGACGATTAACGCCCGTACACATGGATATTCTCAA
CATGAGTTTGATAAATACTTTGAACTCGAGGGTAAAATGATTAGCAACGATCGTCAAGAG
AAAGAACGTGTTGATGCTCGAAATGCTTTAGAAGAGTTTGTCTATGAATATCGTGGTAAA
TTACAAGAGGGCGGAAATCTATTTGAATACATTGATGATCCATCACGTGAAGAGATATGC
CGTCAATTAGACGACGTCGAAAACTGGCTGTATGAGGATGGCGATAGTTGTGAGCGAGAA
ATATACAGGAATCGTTTAGGAGAATTGAATAAAAAGATTGATCCAATTAAAGCACGTCAC
GATGAATATGAAGGTCAACAGCAAGCATTTAATGACCTTGGACATGCAATTCAAATGGCT
TATAAAGCAGTCGAGCAATTCCGTAGTGGCGATCCAAAATATGATCATTTGACTGAAGCT
GAAATGTTAAATATCACTGAAGCTGCTGAGAAAACACAAAAATGGTTCGATGATGCTCGT
GGTAAACTGAGCACCGTGAGAAAAACTCAAGATCCACCTGTCAAATTGGCTGACGCCCGT
CATGAATATCAAACGCTCACAACTTGCGTTAATTCAGTGATTAATCGTCCCAAACCAAGA
CCACCAACACCTCCGCCAGCAACGAAACAAGAAAATAACACTGCTGAACCACAATCTGAG
CAGCCAGCTACTGGTGATGGACAACAGCAAAACAATGCAGAACCGAATTTGAAAGAGGAT
AAAATGGATGTAGATTAA

>g13353.t1 Gene=g13353 Length=825
MSVIGIDFGNESCYIAVAKAGGIETITNDYSLRATPSCVAFTGKNRTLGVAAKNQQVTNM
KNTICGFKHLLGRKFRDPVVQNELNSIPYRVEERPDGSIGICANYMDEDQSFTPEQITAM
LFTKLKIDATDALKTQIYDCVITVPSYFTNAQRKALLDAAGIAGLNCLRLMNETTATALG
YGFYKQDLPAPEEKPRNVIFVDFGHSAIQVSACAFNKGKLKMLASASDLVGGRDVDSMLA
NHFSNEFVTKYKVDPRTNKKAYLRLLTEVEKLKKQMSANSTKLPLSIECFMNDTDVHSSI
QRSDMEEICTSLFQRIEACMKRCLKDSKLTLEDIHAVEIVGGSSRIPAVKHLIEQIFGKT
PSTQLNQDEAVSRGGALQCAVLSPAVRVKDFNIVDIQPFTVMLSFDNENGQRTEMEVFPA
NHASPFSRLLTMYRRDPFAIKLYYADPAPCIDPFIGEWQIKDVKPSATGEAQEVKVKVRI
NHNGLLLVASAQMVEKKDVQEAEQNGNETESTQQQQQSSTPQSPNEQPSNPDSQNTTASS
GTEPMDTTPPSNNEDDKKKKKSSNKIVELTINARTHGYSQHEFDKYFELEGKMISNDRQE
KERVDARNALEEFVYEYRGKLQEGGNLFEYIDDPSREEICRQLDDVENWLYEDGDSCERE
IYRNRLGELNKKIDPIKARHDEYEGQQQAFNDLGHAIQMAYKAVEQFRSGDPKYDHLTEA
EMLNITEAAEKTQKWFDDARGKLSTVRKTQDPPVKLADARHEYQTLTTCVNSVINRPKPR
PPTPPPATKQENNTAEPQSEQPATGDGQQQNNAEPNLKEDKMDVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
27 g13353.t1 CDD cd10228 HSPA4_like_NDB 2 383 0.0
23 g13353.t1 Gene3D G3DSA:3.30.420.40 - 5 376 2.2E-134
25 g13353.t1 Gene3D G3DSA:3.30.30.30 - 38 113 2.2E-134
24 g13353.t1 Gene3D G3DSA:3.30.420.40 - 186 362 2.2E-134
22 g13353.t1 Gene3D G3DSA:3.90.640.10 Actin; Chain A 231 315 2.2E-134
21 g13353.t1 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 389 577 4.7E-34
26 g13353.t1 Gene3D G3DSA:1.20.1270.10 - 578 691 6.6E-29
20 g13353.t1 MobiDBLite mobidb-lite consensus disorder prediction 497 564 -
18 g13353.t1 MobiDBLite mobidb-lite consensus disorder prediction 505 549 -
17 g13353.t1 MobiDBLite mobidb-lite consensus disorder prediction 550 564 -
16 g13353.t1 MobiDBLite mobidb-lite consensus disorder prediction 771 825 -
19 g13353.t1 MobiDBLite mobidb-lite consensus disorder prediction 789 815 -
2 g13353.t1 PANTHER PTHR45639:SF6 HEAT SHOCK 70 KDA PROTEIN 4 1 819 1.9E-259
3 g13353.t1 PANTHER PTHR45639 HSC70CB, ISOFORM G-RELATED 1 819 1.9E-259
10 g13353.t1 PRINTS PR00301 70kDa heat shock protein signature 2 15 2.3E-26
9 g13353.t1 PRINTS PR00301 70kDa heat shock protein signature 30 42 2.3E-26
8 g13353.t1 PRINTS PR00301 70kDa heat shock protein signature 52 60 2.3E-26
5 g13353.t1 PRINTS PR00301 70kDa heat shock protein signature 140 160 2.3E-26
4 g13353.t1 PRINTS PR00301 70kDa heat shock protein signature 334 350 2.3E-26
7 g13353.t1 PRINTS PR00301 70kDa heat shock protein signature 365 385 2.3E-26
6 g13353.t1 PRINTS PR00301 70kDa heat shock protein signature 471 487 2.3E-26
1 g13353.t1 Pfam PF00012 Hsp70 protein 3 679 1.7E-178
15 g13353.t1 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 185 8.51E-56
14 g13353.t1 SUPERFAMILY SSF53067 Actin-like ATPase domain 195 382 3.6E-47
13 g13353.t1 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 386 611 7.06E-19
12 g13353.t1 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 580 680 8.04E-14
11 g13353.t1 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 696 785 2.16E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values