Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein 4L.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13353 g13353.t2 TTS g13353.t2 29479767 29479767
chr_1 g13353 g13353.t2 isoform g13353.t2 29480194 29484787
chr_1 g13353 g13353.t2 exon g13353.t2.exon1 29480194 29480901
chr_1 g13353 g13353.t2 cds g13353.t2.CDS1 29480194 29480901
chr_1 g13353 g13353.t2 exon g13353.t2.exon2 29480973 29481080
chr_1 g13353 g13353.t2 cds g13353.t2.CDS2 29480973 29481080
chr_1 g13353 g13353.t2 exon g13353.t2.exon3 29481487 29481576
chr_1 g13353 g13353.t2 cds g13353.t2.CDS3 29481487 29481576
chr_1 g13353 g13353.t2 exon g13353.t2.exon4 29481960 29482255
chr_1 g13353 g13353.t2 cds g13353.t2.CDS4 29481960 29482255
chr_1 g13353 g13353.t2 exon g13353.t2.exon5 29482315 29483573
chr_1 g13353 g13353.t2 cds g13353.t2.CDS5 29482315 29483573
chr_1 g13353 g13353.t2 exon g13353.t2.exon6 29484681 29484787
chr_1 g13353 g13353.t2 cds g13353.t2.CDS6 29484681 29484787
chr_1 g13353 g13353.t2 TSS g13353.t2 29484998 29484998

Sequences

>g13353.t2 Gene=g13353 Length=2568
ATGAGTGTAATTGGAATCGATTTTGGTAACGAATCATGCTATATAGCAGTCGCCAAAGCT
GGTGGAATAGAGACTATAACAAATGACTACAGCTTGAGAGCAACACCATCATGTGTAGCA
TTTACCGGAAAAAATCGAACTTTAGGTGTTGCGGCAAAGAACCAACAAGTGACAAATATG
AAAAACACAATTTGTGGATTCAAACACCTATTAGGAAGAAAATTTAGAGATCCAGTTGTA
CAAAATGAGTTAAATTCTATACCTTATCGAGTAGAAGAGCGTCCAGATGGCTCTATTGGA
ATTTGCGCAAATTATATGGATGAAGATCAATCTTTTACTCCAGAACAAATCACTGCGATG
CTCTTTACCAAACTTAAAATTGATGCTACAGATGCTTTAAAAACACAAATTTATGATTGT
GTCATTACGGTTCCATCATATTTTACAAATGCTCAGAGAAAAGCATTGCTTGATGCTGCT
GGTATTGCTGGTCTTAATTGTTTACGTTTAATGAATGAAACCACTGCTACTGCTTTGGGT
TATGGTTTTTATAAGCAAGATTTACCTGCACCCGAGGAAAAACCACGAAATGTAATTTTT
GTCGACTTTGGACATAGTGCTATTCAAGTTTCGGCTTGTGCTTTCAACAAAGGAAAATTG
AAGATGCTTGCATCTGCATCTGATCTCGTTGGTGGTCGCGATGTTGACTCAATGCTAGCC
AATCATTTTAGTAACGAGTTTGTAACAAAGTACAAGGTTGATCCACGTACTAATAAAAAA
GCTTATTTGCGTCTGTTGACCGAAGTTGAAAAACTTAAAAAGCAAATGAGTGCAAACAGC
ACGAAATTGCCTTTAAGTATTGAGTGCTTCATGAATGATACAGACGTTCATTCATCAATT
CAACGTAGTGACATGGAAGAGATTTGTACTTCTCTTTTCCAACGAATTGAAGCTTGCATG
AAACGTTGTCTCAAAGACTCAAAGTTGACATTAGAAGATATTCATGCTGTTGAAATCGTT
GGTGGCTCAAGTCGCATTCCAGCAGTTAAACATCTCATAGAACAAATATTTGGCAAAACA
CCAAGCACACAATTGAATCAAGATGAAGCTGTTTCTCGGGGAGGTGCTCTTCAATGTGCA
GTCTTATCGCCAGCTGTTCGTGTTAAAGATTTTAATATAGTTGATATTCAACCTTTTACT
GTTATGCTATCATTTGATAATGAAAATGGTCAGCGTACTGAGATGGAAGTATTTCCTGCT
AATCATGCTTCTCCTTTTAGTCGTCTTTTGACAATGTATCGACGTGATCCTTTTGCTATT
AAATTGTATTATGCTGATCCAGCACCTTGCATTGATCCATTTATCGGAGAATGGCAAATC
AAAGATGTCAAACCATCAGCAACTGGTGAAGCACAAGAAGTAAAAGTCAAAGTTAGAATC
AATCATAATGGTTTATTGCTTGTTGCTAGCGCTCAAATGGTTGAAAAGAAGGATGTTCAG
GAAGCAGAACAAAATGGTAATGAAACAGAATCAACACAACAACAACAACAATCTTCAACG
CCACAATCTCCAAATGAACAACCTTCAAATCCTGATTCTCAAAATACTACCGCTTCATCT
GGCACAGAACCAATGGATACAACTCCTCCTAGCAATAATGAGGGTGCTAGCAGTGAAGAC
GAAATTAAAAGTCCCACGAAAGAGCACGAAAAAACGGGTTGGACACAACGTATCTCACGA
TGGTTCTCTTCGGATGATAAAAAGAAAAAGAAGTCCAGTAATAAGATAGTTGAGTTGACG
ATTAACGCCCGTACACATGGATATTCTCAACATGAGTTTGATAAATACTTTGAACTCGAG
GGTAAAATGATTAGCAACGATCGTCAAGAGAAAGAACGTGTTGATGCTCGAAATGCTTTA
GAAGAGTTTGTCTATGAATATCGTGGTAAATTACAAGAGGGCGGAAATCTATTTGAATAC
ATTGATGATCCATCACGTGAAGAGATATGCCGTCAATTAGACGACGTCGAAAACTGGCTG
TATGAGGATGGCGATAGTTGTGAGCGAGAAATATACAGGAATCGTTTAGGAGAATTGAAT
AAAAAGATTGATCCAATTAAAGCACGTCACGATGAATATGAAGGTCAACAGCAAGCATTT
AATGACCTTGGACATGCAATTCAAATGGCTTATAAAGCAGTCGAGCAATTCCGTAGTGGC
GATCCAAAATATGATCATTTGACTGAAGCTGAAATGTTAAATATCACTGAAGCTGCTGAG
AAAACACAAAAATGGTTCGATGATGCTCGTGGTAAACTGAGCACCGTGAGAAAAACTCAA
GATCCACCTGTCAAATTGGCTGACGCCCGTCATGAATATCAAACGCTCACAACTTGCGTT
AATTCAGTGATTAATCGTCCCAAACCAAGACCACCAACACCTCCGCCAGCAACGAAACAA
GAAAATAACACTGCTGAACCACAATCTGAGCAGCCAGCTACTGGTGATGGACAACAGCAA
AACAATGCAGAACCGAATTTGAAAGAGGATAAAATGGATGTAGATTAA

>g13353.t2 Gene=g13353 Length=855
MSVIGIDFGNESCYIAVAKAGGIETITNDYSLRATPSCVAFTGKNRTLGVAAKNQQVTNM
KNTICGFKHLLGRKFRDPVVQNELNSIPYRVEERPDGSIGICANYMDEDQSFTPEQITAM
LFTKLKIDATDALKTQIYDCVITVPSYFTNAQRKALLDAAGIAGLNCLRLMNETTATALG
YGFYKQDLPAPEEKPRNVIFVDFGHSAIQVSACAFNKGKLKMLASASDLVGGRDVDSMLA
NHFSNEFVTKYKVDPRTNKKAYLRLLTEVEKLKKQMSANSTKLPLSIECFMNDTDVHSSI
QRSDMEEICTSLFQRIEACMKRCLKDSKLTLEDIHAVEIVGGSSRIPAVKHLIEQIFGKT
PSTQLNQDEAVSRGGALQCAVLSPAVRVKDFNIVDIQPFTVMLSFDNENGQRTEMEVFPA
NHASPFSRLLTMYRRDPFAIKLYYADPAPCIDPFIGEWQIKDVKPSATGEAQEVKVKVRI
NHNGLLLVASAQMVEKKDVQEAEQNGNETESTQQQQQSSTPQSPNEQPSNPDSQNTTASS
GTEPMDTTPPSNNEGASSEDEIKSPTKEHEKTGWTQRISRWFSSDDKKKKKSSNKIVELT
INARTHGYSQHEFDKYFELEGKMISNDRQEKERVDARNALEEFVYEYRGKLQEGGNLFEY
IDDPSREEICRQLDDVENWLYEDGDSCEREIYRNRLGELNKKIDPIKARHDEYEGQQQAF
NDLGHAIQMAYKAVEQFRSGDPKYDHLTEAEMLNITEAAEKTQKWFDDARGKLSTVRKTQ
DPPVKLADARHEYQTLTTCVNSVINRPKPRPPTPPPATKQENNTAEPQSEQPATGDGQQQ
NNAEPNLKEDKMDVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
27 g13353.t2 CDD cd10228 HSPA4_like_NDB 2 383 0.0
23 g13353.t2 Gene3D G3DSA:3.30.420.40 - 5 376 2.4E-134
25 g13353.t2 Gene3D G3DSA:3.30.30.30 - 38 113 2.4E-134
24 g13353.t2 Gene3D G3DSA:3.30.420.40 - 186 362 2.4E-134
22 g13353.t2 Gene3D G3DSA:3.90.640.10 Actin; Chain A 231 315 2.4E-134
21 g13353.t2 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 389 532 1.9E-35
26 g13353.t2 Gene3D G3DSA:1.20.1270.10 - 608 721 6.9E-29
17 g13353.t2 MobiDBLite mobidb-lite consensus disorder prediction 497 575 -
20 g13353.t2 MobiDBLite mobidb-lite consensus disorder prediction 505 559 -
19 g13353.t2 MobiDBLite mobidb-lite consensus disorder prediction 560 575 -
18 g13353.t2 MobiDBLite mobidb-lite consensus disorder prediction 800 855 -
16 g13353.t2 MobiDBLite mobidb-lite consensus disorder prediction 819 845 -
2 g13353.t2 PANTHER PTHR45639:SF6 HEAT SHOCK 70 KDA PROTEIN 4 1 849 3.6E-254
3 g13353.t2 PANTHER PTHR45639 HSC70CB, ISOFORM G-RELATED 1 849 3.6E-254
10 g13353.t2 PRINTS PR00301 70kDa heat shock protein signature 2 15 2.9E-26
9 g13353.t2 PRINTS PR00301 70kDa heat shock protein signature 30 42 2.9E-26
8 g13353.t2 PRINTS PR00301 70kDa heat shock protein signature 52 60 2.9E-26
5 g13353.t2 PRINTS PR00301 70kDa heat shock protein signature 140 160 2.9E-26
4 g13353.t2 PRINTS PR00301 70kDa heat shock protein signature 334 350 2.9E-26
7 g13353.t2 PRINTS PR00301 70kDa heat shock protein signature 365 385 2.9E-26
6 g13353.t2 PRINTS PR00301 70kDa heat shock protein signature 471 487 2.9E-26
1 g13353.t2 Pfam PF00012 Hsp70 protein 3 709 7.8E-178
15 g13353.t2 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 185 9.07E-56
14 g13353.t2 SUPERFAMILY SSF53067 Actin-like ATPase domain 195 382 3.82E-47
13 g13353.t2 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 386 641 1.69E-18
11 g13353.t2 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 610 710 8.44E-14
12 g13353.t2 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 726 815 2.16E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values