Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13353 g13353.t4 TTS g13353.t4 29481075 29481075
chr_1 g13353 g13353.t4 isoform g13353.t4 29481576 29484787
chr_1 g13353 g13353.t4 exon g13353.t4.exon1 29481576 29482255
chr_1 g13353 g13353.t4 cds g13353.t4.CDS1 29481885 29482255
chr_1 g13353 g13353.t4 exon g13353.t4.exon2 29482315 29483573
chr_1 g13353 g13353.t4 cds g13353.t4.CDS2 29482315 29483573
chr_1 g13353 g13353.t4 exon g13353.t4.exon3 29484681 29484787
chr_1 g13353 g13353.t4 cds g13353.t4.CDS3 29484681 29484787
chr_1 g13353 g13353.t4 TSS g13353.t4 29484998 29484998

Sequences

>g13353.t4 Gene=g13353 Length=2046
ATGAGTGTAATTGGAATCGATTTTGGTAACGAATCATGCTATATAGCAGTCGCCAAAGCT
GGTGGAATAGAGACTATAACAAATGACTACAGCTTGAGAGCAACACCATCATGTGTAGCA
TTTACCGGAAAAAATCGAACTTTAGGTGTTGCGGCAAAGAACCAACAAGTGACAAATATG
AAAAACACAATTTGTGGATTCAAACACCTATTAGGAAGAAAATTTAGAGATCCAGTTGTA
CAAAATGAGTTAAATTCTATACCTTATCGAGTAGAAGAGCGTCCAGATGGCTCTATTGGA
ATTTGCGCAAATTATATGGATGAAGATCAATCTTTTACTCCAGAACAAATCACTGCGATG
CTCTTTACCAAACTTAAAATTGATGCTACAGATGCTTTAAAAACACAAATTTATGATTGT
GTCATTACGGTTCCATCATATTTTACAAATGCTCAGAGAAAAGCATTGCTTGATGCTGCT
GGTATTGCTGGTCTTAATTGTTTACGTTTAATGAATGAAACCACTGCTACTGCTTTGGGT
TATGGTTTTTATAAGCAAGATTTACCTGCACCCGAGGAAAAACCACGAAATGTAATTTTT
GTCGACTTTGGACATAGTGCTATTCAAGTTTCGGCTTGTGCTTTCAACAAAGGAAAATTG
AAGATGCTTGCATCTGCATCTGATCTCGTTGGTGGTCGCGATGTTGACTCAATGCTAGCC
AATCATTTTAGTAACGAGTTTGTAACAAAGTACAAGGTTGATCCACGTACTAATAAAAAA
GCTTATTTGCGTCTGTTGACCGAAGTTGAAAAACTTAAAAAGCAAATGAGTGCAAACAGC
ACGAAATTGCCTTTAAGTATTGAGTGCTTCATGAATGATACAGACGTTCATTCATCAATT
CAACGTAGTGACATGGAAGAGATTTGTACTTCTCTTTTCCAACGAATTGAAGCTTGCATG
AAACGTTGTCTCAAAGACTCAAAGTTGACATTAGAAGATATTCATGCTGTTGAAATCGTT
GGTGGCTCAAGTCGCATTCCAGCAGTTAAACATCTCATAGAACAAATATTTGGCAAAACA
CCAAGCACACAATTGAATCAAGATGAAGCTGTTTCTCGGGGAGGTGCTCTTCAATGTGCA
GTCTTATCGCCAGCTGTTCGTGTTAAAGATTTTAATATAGTTGATATTCAACCTTTTACT
GTTATGCTATCATTTGATAATGAAAATGGTCAGCGTACTGAGATGGAAGTATTTCCTGCT
AATCATGCTTCTCCTTTTAGTCGTCTTTTGACAATGTATCGACGTGATCCTTTTGCTATT
AAATTGTATTATGCTGATCCAGCACCTTGCATTGATCCATTTATCGGAGAATGGCAAATC
AAAGATGTCAAACCATCAGCAACTGGTGAAGCACAAGAAGTAAAAGTCAAAGTTAGAATC
AATCATAATGGTTTATTGCTTGTTGCTAGCGCTCAAATGGTTGAAAAGAAGGATGTTCAG
GAAGCAGAACAAAATGGTAATGAAACAGAATCAACACAACAACAACAACAATCTTCAACG
CCACAATCTCCAAATGAACAACCTTCAAATCCTGATTCTCAAAATACTACCGCTTCATCT
GGCACAGAACCAATGGATACAACTCCTCCTAGCAATAATGAGGTAAGTTACATTGAGTTT
GCTTCATGCTTATCTCTATTCTCGCTCCCATTCCTGCCGCATTTTACTAATCTGTAGAAT
ACTTGTAATTCAAACAAATTTCTAAATGACAAAAACAGTGTCACTCTCACCCTATTTCTT
TTATATATCTTCTGTATTTAATAAGATACATGTTTTATAATGGTATCTCAATGAAGATGA
CCATCGTGCTGATATTTCTCTTTTTACACATTCTTATGTTTTCTCACATTTGAACTATTT
TTATCCTACCAAAAATAAACAATTATTGTCCAAATAGAAAAAACATTTATATTATTAATG
AAAAAATAATAATTCTTTCGTGTGTGTCTCTCTTGTATGAATGAACCGAAAATCTCGACA
TATAGG

>g13353.t4 Gene=g13353 Length=578
MSVIGIDFGNESCYIAVAKAGGIETITNDYSLRATPSCVAFTGKNRTLGVAAKNQQVTNM
KNTICGFKHLLGRKFRDPVVQNELNSIPYRVEERPDGSIGICANYMDEDQSFTPEQITAM
LFTKLKIDATDALKTQIYDCVITVPSYFTNAQRKALLDAAGIAGLNCLRLMNETTATALG
YGFYKQDLPAPEEKPRNVIFVDFGHSAIQVSACAFNKGKLKMLASASDLVGGRDVDSMLA
NHFSNEFVTKYKVDPRTNKKAYLRLLTEVEKLKKQMSANSTKLPLSIECFMNDTDVHSSI
QRSDMEEICTSLFQRIEACMKRCLKDSKLTLEDIHAVEIVGGSSRIPAVKHLIEQIFGKT
PSTQLNQDEAVSRGGALQCAVLSPAVRVKDFNIVDIQPFTVMLSFDNENGQRTEMEVFPA
NHASPFSRLLTMYRRDPFAIKLYYADPAPCIDPFIGEWQIKDVKPSATGEAQEVKVKVRI
NHNGLLLVASAQMVEKKDVQEAEQNGNETESTQQQQQSSTPQSPNEQPSNPDSQNTTASS
GTEPMDTTPPSNNEVSYIEFASCLSLFSLPFLPHFTNL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
21 g13353.t4 CDD cd10228 HSPA4_like_NDB 2 383 0.0
18 g13353.t4 Gene3D G3DSA:3.30.420.40 - 5 376 8.5E-135
20 g13353.t4 Gene3D G3DSA:3.30.30.30 - 38 113 8.5E-135
19 g13353.t4 Gene3D G3DSA:3.30.420.40 - 186 362 8.5E-135
17 g13353.t4 Gene3D G3DSA:3.90.640.10 Actin; Chain A 231 315 8.5E-135
16 g13353.t4 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 389 533 9.9E-36
14 g13353.t4 MobiDBLite mobidb-lite consensus disorder prediction 497 552 -
15 g13353.t4 MobiDBLite mobidb-lite consensus disorder prediction 505 552 -
2 g13353.t4 PANTHER PTHR45639:SF6 HEAT SHOCK 70 KDA PROTEIN 4 1 552 2.1E-205
3 g13353.t4 PANTHER PTHR45639 HSC70CB, ISOFORM G-RELATED 1 552 2.1E-205
10 g13353.t4 PRINTS PR00301 70kDa heat shock protein signature 2 15 2.4E-27
9 g13353.t4 PRINTS PR00301 70kDa heat shock protein signature 30 42 2.4E-27
8 g13353.t4 PRINTS PR00301 70kDa heat shock protein signature 52 60 2.4E-27
5 g13353.t4 PRINTS PR00301 70kDa heat shock protein signature 140 160 2.4E-27
4 g13353.t4 PRINTS PR00301 70kDa heat shock protein signature 334 350 2.4E-27
7 g13353.t4 PRINTS PR00301 70kDa heat shock protein signature 365 385 2.4E-27
6 g13353.t4 PRINTS PR00301 70kDa heat shock protein signature 471 487 2.4E-27
1 g13353.t4 Pfam PF00012 Hsp70 protein 3 522 1.2E-170
13 g13353.t4 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 185 4.44E-56
12 g13353.t4 SUPERFAMILY SSF53067 Actin-like ATPase domain 195 382 1.73E-47
11 g13353.t4 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 386 500 1.92E-11

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values