Gene loci information

Transcript annotation

  • This transcript has been annotated as 97 kDa heat shock protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13353 g13353.t5 TTS g13353.t5 29481075 29481075
chr_1 g13353 g13353.t5 isoform g13353.t5 29481960 29482997
chr_1 g13353 g13353.t5 exon g13353.t5.exon1 29481960 29482255
chr_1 g13353 g13353.t5 cds g13353.t5.CDS1 29481960 29482255
chr_1 g13353 g13353.t5 exon g13353.t5.exon2 29482315 29482997
chr_1 g13353 g13353.t5 cds g13353.t5.CDS2 29482315 29482969
chr_1 g13353 g13353.t5 TSS g13353.t5 NA NA

Sequences

>g13353.t5 Gene=g13353 Length=979
TCTCGTTGGTGGTCGCGATGTTGACTCAATGCTAGCCAATCATTTTAGTAACGAGTTTGT
AACAAAGTACAAGGTTGATCCACGTACTAATAAAAAAGCTTATTTGCGTCTGTTGACCGA
AGTTGAAAAACTTAAAAAGCAAATGAGTGCAAACAGCACGAAATTGCCTTTAAGTATTGA
GTGCTTCATGAATGATACAGACGTTCATTCATCAATTCAACGTAGTGACATGGAAGAGAT
TTGTACTTCTCTTTTCCAACGAATTGAAGCTTGCATGAAACGTTGTCTCAAAGACTCAAA
GTTGACATTAGAAGATATTCATGCTGTTGAAATCGTTGGTGGCTCAAGTCGCATTCCAGC
AGTTAAACATCTCATAGAACAAATATTTGGCAAAACACCAAGCACACAATTGAATCAAGA
TGAAGCTGTTTCTCGGGGAGGTGCTCTTCAATGTGCAGTCTTATCGCCAGCTGTTCGTGT
TAAAGATTTTAATATAGTTGATATTCAACCTTTTACTGTTATGCTATCATTTGATAATGA
AAATGGTCAGCGTACTGAGATGGAAGTATTTCCTGCTAATCATGCTTCTCCTTTTAGTCG
TCTTTTGACAATGTATCGACGTGATCCTTTTGCTATTAAATTGTATTATGCTGATCCAGC
ACCTTGCATTGATCCATTTATCGGAGAATGGCAAATCAAAGATGTCAAACCATCAGCAAC
TGGTGAAGCACAAGAAGTAAAAGTCAAAGTTAGAATCAATCATAATGGTTTATTGCTTGT
TGCTAGCGCTCAAATGGTTGAAAAGAAGGATGTTCAGGAAGCAGAACAAAATGGTAATGA
AACAGAATCAACACAACAACAACAACAATCTTCAACGCCACAATCTCCAAATGAACAACC
TTCAAATCCTGATTCTCAAAATACTACCGCTTCATCTGGCACAGAACCAATGGATACAAC
TCCTCCTAGCAATAATGAG

>g13353.t5 Gene=g13353 Length=317
MLANHFSNEFVTKYKVDPRTNKKAYLRLLTEVEKLKKQMSANSTKLPLSIECFMNDTDVH
SSIQRSDMEEICTSLFQRIEACMKRCLKDSKLTLEDIHAVEIVGGSSRIPAVKHLIEQIF
GKTPSTQLNQDEAVSRGGALQCAVLSPAVRVKDFNIVDIQPFTVMLSFDNENGQRTEMEV
FPANHASPFSRLLTMYRRDPFAIKLYYADPAPCIDPFIGEWQIKDVKPSATGEAQEVKVK
VRINHNGLLLVASAQMVEKKDVQEAEQNGNETESTQQQQQSSTPQSPNEQPSNPDSQNTT
ASSGTEPMDTTPPSNNE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g13353.t5 Gene3D G3DSA:3.90.640.10 Actin; Chain A 2 78 2.8E-46
14 g13353.t5 Gene3D G3DSA:3.30.420.40 - 79 125 2.8E-46
13 g13353.t5 Gene3D G3DSA:3.30.420.40 - 126 139 2.8E-46
11 g13353.t5 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 152 298 3.1E-36
10 g13353.t5 MobiDBLite mobidb-lite consensus disorder prediction 260 317 -
9 g13353.t5 MobiDBLite mobidb-lite consensus disorder prediction 268 317 -
2 g13353.t5 PANTHER PTHR45639:SF2 HEAT SHOCK PROTEIN 105 KDA 2 314 5.3E-93
3 g13353.t5 PANTHER PTHR45639 HSC70CB, ISOFORM G-RELATED 2 314 5.3E-93
5 g13353.t5 PRINTS PR00301 70kDa heat shock protein signature 97 113 6.6E-11
4 g13353.t5 PRINTS PR00301 70kDa heat shock protein signature 128 148 6.6E-11
6 g13353.t5 PRINTS PR00301 70kDa heat shock protein signature 234 250 6.6E-11
1 g13353.t5 Pfam PF00012 Hsp70 protein 2 285 3.0E-75
8 g13353.t5 SUPERFAMILY SSF53067 Actin-like ATPase domain 2 145 2.09E-36
7 g13353.t5 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 149 263 2.94E-12

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed