Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13353 g13353.t6 isoform g13353.t6 29482678 29484787
chr_1 g13353 g13353.t6 exon g13353.t6.exon1 29482678 29483573
chr_1 g13353 g13353.t6 cds g13353.t6.CDS1 29482679 29483573
chr_1 g13353 g13353.t6 exon g13353.t6.exon2 29484681 29484787
chr_1 g13353 g13353.t6 cds g13353.t6.CDS2 29484681 29484787
chr_1 g13353 g13353.t6 TSS g13353.t6 29484998 29484998
chr_1 g13353 g13353.t6 TTS g13353.t6 NA NA

Sequences

>g13353.t6 Gene=g13353 Length=1003
ATGAGTGTAATTGGAATCGATTTTGGTAACGAATCATGCTATATAGCAGTCGCCAAAGCT
GGTGGAATAGAGACTATAACAAATGACTACAGCTTGAGAGCAACACCATCATGTGTAGCA
TTTACCGGAAAAAATCGAACTTTAGGTGTTGCGGCAAAGAACCAACAAGTGACAAATATG
AAAAACACAATTTGTGGATTCAAACACCTATTAGGAAGAAAATTTAGAGATCCAGTTGTA
CAAAATGAGTTAAATTCTATACCTTATCGAGTAGAAGAGCGTCCAGATGGCTCTATTGGA
ATTTGCGCAAATTATATGGATGAAGATCAATCTTTTACTCCAGAACAAATCACTGCGATG
CTCTTTACCAAACTTAAAATTGATGCTACAGATGCTTTAAAAACACAAATTTATGATTGT
GTCATTACGGTTCCATCATATTTTACAAATGCTCAGAGAAAAGCATTGCTTGATGCTGCT
GGTATTGCTGGTCTTAATTGTTTACGTTTAATGAATGAAACCACTGCTACTGCTTTGGGT
TATGGTTTTTATAAGCAAGATTTACCTGCACCCGAGGAAAAACCACGAAATGTAATTTTT
GTCGACTTTGGACATAGTGCTATTCAAGTTTCGGCTTGTGCTTTCAACAAAGGAAAATTG
AAGATGCTTGCATCTGCATCTGATCTCGTTGGTGGTCGCGATGTTGACTCAATGCTAGCC
AATCATTTTAGTAACGAGTTTGTAACAAAGTACAAGGTTGATCCACGTACTAATAAAAAA
GCTTATTTGCGTCTGTTGACCGAAGTTGAAAAACTTAAAAAGCAAATGAGTGCAAACAGC
ACGAAATTGCCTTTAAGTATTGAGTGCTTCATGAATGATACAGACGTTCATTCATCAATT
CAACGTAGTGACATGGAAGAGATTTGTACTTCTCTTTTCCAACGAATTGAAGCTTGCATG
AAACGTTGTCTCAAAGACTCAAAGTTGACATTAGAAGATATTC

>g13353.t6 Gene=g13353 Length=334
MSVIGIDFGNESCYIAVAKAGGIETITNDYSLRATPSCVAFTGKNRTLGVAAKNQQVTNM
KNTICGFKHLLGRKFRDPVVQNELNSIPYRVEERPDGSIGICANYMDEDQSFTPEQITAM
LFTKLKIDATDALKTQIYDCVITVPSYFTNAQRKALLDAAGIAGLNCLRLMNETTATALG
YGFYKQDLPAPEEKPRNVIFVDFGHSAIQVSACAFNKGKLKMLASASDLVGGRDVDSMLA
NHFSNEFVTKYKVDPRTNKKAYLRLLTEVEKLKKQMSANSTKLPLSIECFMNDTDVHSSI
QRSDMEEICTSLFQRIEACMKRCLKDSKLTLEDI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g13353.t6 CDD cd10228 HSPA4_like_NDB 2 334 0
11 g13353.t6 Gene3D G3DSA:3.30.420.40 - 5 185 0
13 g13353.t6 Gene3D G3DSA:3.30.30.30 - 38 113 0
12 g13353.t6 Gene3D G3DSA:3.30.420.40 - 186 334 0
10 g13353.t6 Gene3D G3DSA:3.90.640.10 Actin; Chain A 231 315 0
2 g13353.t6 PANTHER PTHR45639:SF6 HEAT SHOCK 70 KDA PROTEIN 4 1 334 0
3 g13353.t6 PANTHER PTHR45639 HSC70CB, ISOFORM G-RELATED 1 334 0
7 g13353.t6 PRINTS PR00301 70kDa heat shock protein signature 2 15 0
6 g13353.t6 PRINTS PR00301 70kDa heat shock protein signature 30 42 0
5 g13353.t6 PRINTS PR00301 70kDa heat shock protein signature 52 60 0
4 g13353.t6 PRINTS PR00301 70kDa heat shock protein signature 140 160 0
1 g13353.t6 Pfam PF00012 Hsp70 protein 3 334 0
9 g13353.t6 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 185 0
8 g13353.t6 SUPERFAMILY SSF53067 Actin-like ATPase domain 195 334 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed