Gene loci information

Transcript annotation

  • This transcript has been annotated as Myosin heavy chain, non-muscle.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13357 g13357.t1 isoform g13357.t1 29493352 29507532
chr_1 g13357 g13357.t1 exon g13357.t1.exon1 29493352 29493383
chr_1 g13357 g13357.t1 cds g13357.t1.CDS1 29493352 29493383
chr_1 g13357 g13357.t1 exon g13357.t1.exon2 29493631 29493737
chr_1 g13357 g13357.t1 cds g13357.t1.CDS2 29493631 29493737
chr_1 g13357 g13357.t1 exon g13357.t1.exon3 29494683 29494846
chr_1 g13357 g13357.t1 cds g13357.t1.CDS3 29494683 29494846
chr_1 g13357 g13357.t1 exon g13357.t1.exon4 29494912 29495973
chr_1 g13357 g13357.t1 cds g13357.t1.CDS4 29494912 29495973
chr_1 g13357 g13357.t1 exon g13357.t1.exon5 29496034 29496443
chr_1 g13357 g13357.t1 cds g13357.t1.CDS5 29496034 29496443
chr_1 g13357 g13357.t1 exon g13357.t1.exon6 29496509 29496863
chr_1 g13357 g13357.t1 cds g13357.t1.CDS6 29496509 29496863
chr_1 g13357 g13357.t1 exon g13357.t1.exon7 29496925 29497229
chr_1 g13357 g13357.t1 cds g13357.t1.CDS7 29496925 29497229
chr_1 g13357 g13357.t1 exon g13357.t1.exon8 29497289 29499332
chr_1 g13357 g13357.t1 cds g13357.t1.CDS8 29497289 29499332
chr_1 g13357 g13357.t1 exon g13357.t1.exon9 29499522 29499529
chr_1 g13357 g13357.t1 cds g13357.t1.CDS9 29499522 29499529
chr_1 g13357 g13357.t1 exon g13357.t1.exon10 29499593 29499614
chr_1 g13357 g13357.t1 cds g13357.t1.CDS10 29499593 29499614
chr_1 g13357 g13357.t1 exon g13357.t1.exon11 29499769 29499776
chr_1 g13357 g13357.t1 cds g13357.t1.CDS11 29499769 29499776
chr_1 g13357 g13357.t1 exon g13357.t1.exon12 29499897 29500554
chr_1 g13357 g13357.t1 cds g13357.t1.CDS12 29499897 29500554
chr_1 g13357 g13357.t1 exon g13357.t1.exon13 29500612 29500704
chr_1 g13357 g13357.t1 cds g13357.t1.CDS13 29500612 29500704
chr_1 g13357 g13357.t1 exon g13357.t1.exon14 29501749 29501772
chr_1 g13357 g13357.t1 cds g13357.t1.CDS14 29501749 29501772
chr_1 g13357 g13357.t1 exon g13357.t1.exon15 29501853 29501974
chr_1 g13357 g13357.t1 cds g13357.t1.CDS15 29501853 29501974
chr_1 g13357 g13357.t1 exon g13357.t1.exon16 29503732 29503888
chr_1 g13357 g13357.t1 cds g13357.t1.CDS16 29503732 29503888
chr_1 g13357 g13357.t1 exon g13357.t1.exon17 29504477 29504692
chr_1 g13357 g13357.t1 cds g13357.t1.CDS17 29504477 29504692
chr_1 g13357 g13357.t1 exon g13357.t1.exon18 29507398 29507532
chr_1 g13357 g13357.t1 cds g13357.t1.CDS18 29507398 29507532
chr_1 g13357 g13357.t1 TSS g13357.t1 29508042 29508042
chr_1 g13357 g13357.t1 TTS g13357.t1 NA NA

Sequences

>g13357.t1 Gene=g13357 Length=5922
ATGTCGGAGGATTTAAGAGACCGCAATGATCCAGAATTAAAGTGTCTTAGTGTCGAAAGG
AGCAATTTTAATGATCCCGCGACACAAGCTGAATGGACTCAGAAACGCCTTGTCTGGGTT
CCATCAGACACTCAAGGATTCGTTGCGGCGAGCATCAAAGGAGAACGTGGCGATGAAGTC
GAAGTAGAATTAACTGAGACTGGAAAACGCATAATGATACTTAAAGATGACATACAAAAA
ATGAATCCGCCAAAATTTGACAAAGTCGAAGATATGGCCGAATTGACTTGCCTGAATGAA
GCATCAGTCTTACACAACATCAAAGACCGATATTATTCGGGATTGATTTATACTTATTCA
GGACTTTTCTGCGTTGTTGTAAATCCATATAAGAAACTTCCAATTTATACTGAGAAAATT
ATGGAAAAATATAAGGGAATTAAGCGACATGAAGTTCCACCACATGTTTTTGCAATCACT
GATACAGCTTATCGATCTATGCTTCAAGATCGCGAGGATCAATCGATTCTTTGTACAGGT
GAATCAGGAGCTGGCAAGACGGAAAATACAAAAAAAGTTATTCAATATTTGGCATATGTA
GCTGCATCAAAGCCAAAGGGTTCTATTTCTGGGCCCAGTCCAGCTTTAATAATTGGTGAA
TTGGAACAACAGTTGCTGCAAGCAAATCCAATCCTTGAAGCATTCGGTAATGCAAAGACC
GTTAAGAACGATAACTCTTCAAGATTTGGTAAATTTATTCGTATCAACTTTGATGCATCC
GGTTATATTTCTGGTGCTAATATTGAGACCTATCTATTGGAAAAATCAAGAGCCATTCGT
CAAGCCTCCGATGAGCGAACATTCCATATCTTTTATCAACTTTTAGCTGGTGCAACTGCC
GAGCAACGTGATAAATACATTCTTGAAGACATCAAAAGTTATCCTTTTCTATCAAATGGG
CCTCTTCCAGTTCCTGGTGTTGATGATTATGCTGAATTTCAAGCTACAGTTAAATCTATG
GGTATCATGGGAATGACAACTGAAGATTACAATTCAATTTTCAAGATAGTCAGTGCTGTT
TTGCTTTTCGGTTCAATGAAATTCAAACAAGAACGCAACAATGATCAAGCAACATTACCA
GATAATACTGTCGCACAGAAAGTTGCTCATCTGCTTGGATTGAGTGTTACTGATATGACA
AAAGCATTCTTGACACCACGCATTAAAGTTGGTCGTGATTACGTTACAAAAGCACAAACA
AAAGAACAAGTGGAATTTGCTGTTGAAGCTATTGCTAAGGCTTGTTATGAGAGACTCTTC
AAATGGCTTGTTACTCGTATCAATCGATCATTGGATAGAACAAAGCGGCAAGGAGCATCA
TTTATTGCAATTTTGGATATCGCAGGATTCGAGATCTTCCAATTAAACTCATATGAACAA
CTGTGCATTAATTACACAAACGAAAAGCTTCAACAACTTTTTAATCATACAATGTTTATT
TTGGAACAAGAAGAGTATCAACGCGAAGGCATTGATTGGAAATTTATCGATTTTGGTCTC
GATTTGCAACCAACTATTGATTTGATTGATAAGCCTGGTGGAATTATGGCACTCCTCGAT
GAAGAATGTTGGTTCCCGAAAGCAACTGATAAGACTTTTGTAGAAAAATTGACATCAGCC
CACAGCGCTCACCCGAAATATATGAAAACTGATTTCCGAGGTGTTGCTGATTTTGCAATT
GTACATTATGCTGGCAGAGTCGATTATTCAGCGGAAAAGTGGCTTATGAAAAATATGGAT
CCATTAAATGAAAACGTTGTTTCATTATTGCAATCATCAGCAGATCCATTTGTTGTTCAA
ATTTGGAAAGATGCAGAAATTGTTGGAATGGCTCAACAAGCTCTCAGTGACACACAATTT
GGGGCTCGTACACGTAAAGGAATGTTTAGAACTGTTTCACATTTATATAAGGAACAACTC
TCTAAGCTTATGGATACATTGAAAAATACAAATCCCAATTTTGTTCGTTGCATATTACCA
AATCATGAAAAGCGTTCTGGTAAAATTGAAGCTCAATTGGTGCTCGATCAACTTCGTTGC
AATGGAGTTCTCGAAGGGATTCGTATTTGCCGTCAAGGTTTTCCTAATAGAATTCCATTC
CAAGAATTCCGTCAACGCTATGAATTGCTTACTCCAAATGTCATTCCAAAAGGTTTTATG
GACGGCAAAAAAGCTTGTGAAAAGATGATTCAGGCACTTGAACTTGACAATAATTTATAC
CGAGTTGGTCAATCAAAAATTTTCTTCCGTGCTGGTGTTCTAGCTCATCTTGAAGAAGAG
CGTGATTATAAGATAACTGATTTAATTGTCAACTTCCAAGCATTCTGTCGTGGTTATTTA
GCTCGCAGAAATTATCAAAAACGTTTGCAGCAATTGAATGCCATTAGAATCATACAGCGT
AACTGTGCTGCTTATCTGAAATTGCGTAATTGGCAATGGTGGCGTTTATATACAAAAGTC
AAACCACTATTGGAAGTCACAAAACAAGAAGAAAAACTTGTGCAAAAGGAAGATGAATTG
CGTCAAATTCGTGAGAAGCTTGATACACTCTCAAAAGCAACAGCTGAGTATGAAAACAAA
TATCAAATGGCCATCGAAGAAAAGACTCATCTGGCTGAACAATTGCAAGCCGAGATTGAA
TTATGTGCTGAAGCAGAAGAAAGTAGAATGCGATTGGCTTCACGCAAACAAGAACTTGAA
GAGATGATGCAAGATTTAGAGGCGCGTGTCGAAGAAGAAGAAGAAAGGGTCAATGCACTT
AACAATGAAAAGAAAAAACTTCAATTGAATATTCAAGATTTAGAAGAACAACTTGAGGAA
GAAGAAGCCGCACGACAAAAATTGCAACTCGAAAAAGTTCAACTTGATGCCAAGCTGAAG
AAATATGAGGAAGATGTTGCTGTAATTGATGATCAAAATCAAAAACTTTTTAAAGAAAAG
AAACTTCTCGAAGAACGTGCCAATGATTTGTCTCAGACTCTTGCTGAAGAGGAAGAAAAA
GCCAAGCATTTAGCAAAACTGAAAGTAAAACATGAAGCCACAATTGCAGAGCTTGAAGAA
CGTTTAAGAAAAGACCATCAACAAAGACAAGAATCAGATCGAACTAAGAGAAAAATTGAA
ACCGAAGTGGCTGATTTGAAAGAGCAACTGAATGAGAAACGTATTCAGATTGAAGAAATT
CAACAGCAATTAGTAAAACGTGAAGAAGAACTTACTAATACACTATTAAGAATTGATGAG
GAATCTGCAGCTAAAGCAAATGCACAGAAATTGCAACGTGAACTCGAATCACAATTGGCG
GAAGTTCAAGAAGACTTGGAAGCTGAAAAGGCTGCACGTGCAAAAGCTGAAAAACAGAAA
CGTGATCTTAATGAAGAATTGGAAGCTCTTAAAAATGAATTGCTTGATTCATTAGATACA
ACTGCGGCACAACAAGAACTTCGTTCAAAGAGAGAACAAGAAGTTGCATCACTTAAGAAA
GCACTCGAAGAAGAAGCAGCAAATCATGAGGGTCAGTTGCAGGATATGCGTCACAAGCAT
TCTCAAGAACTGAGTGCGGCCAATGAACAGCTCGAAAATAACAAAAAAGCAAAATTAGCT
TTAGAAAAGCAGAAACAAACACTTGAAGCCGAAAATGCTGACTTGGCAACGGAACTGCGA
AATGTCAATCAATCACGTCAAGAAAATGATAGACGTCGTAAGCAAGCTGAACAGCAATTT
TCAGAAGTTCAAATGAAATATGCTGAGCTTGAGAGAACTCGTTCAGAAATGCAGGAAAAA
ATGATCAAAATTCAGCAAGAAGCCGATTCGCTTGCACAACAATTAGAGGAAGCCGAAACT
AAAGCTAGTGCAGCTATAAAGTCAGCGAGTACAATTGAAAGTCAATTATCAGAATCACAG
CAATTACTTGAAGAAGAGACTCGTCAAAAATTGGCATTGAGCTCAAAATTGCGTCAATTG
GAATCAGAAAAGGAAGCTCTTCAAGAGCAACTTGAGGAAGATCTTGAAGCGAAAAAGAAT
TATGAACGTAAAATGGCTGAATTGACCGCACAAATGCAAGAGGCCAAGAAAAAAGCTGAT
GAGGAAGGCGAAATAGTAAAAGAACTTGAAGAATCGAAAAAGAAACTTAACAAGGACGTT
GAAGCCCTTCAACGACAAATTCAAGAACTTCAGGCAGCCAATGATAGACTTGATAAGAGT
AAGAAGAAGTTGCAATCGGAACTTGAAGATACCACAATTGAGCTTGAAGCTCAACGTACA
AAGGTGTTAGAACTTGAAAAGAAACAAAAAGTCTTTGATAAGGTTGTTGCTGAAGAAAAA
GCCGTAAGTGAACAATATGCACAAGAACGCGATGCTGCAGAAAGAGATGCACGAGAGAAA
GAAACAAAGGTGCTATCATTGACACGCGAACTAGATGAAGCTTATGAAAAGATTGAAGAT
TTGGAGTCAAAGCGTAAATCTCTTCAAAATGAATTGGATGAATTGGCAAATACTCAGGGA
ACTGCCGACAAGAACGTTCATGAGCTTGAAAAAGCAAAGCGTGCTCTTGAAAGTCAATTA
GCTGAATTAAAAGCACAAAATGAAGAATTGGAAGATGATTTGCAATTGACAGAGGATGCA
AAATTACGTTTGGAAGTAAATATGCAAGCATTGCGTACACAATTTGAACGCGATCTTCAA
GCAAAAGAAGAACAAGCTGAAGAAAAACGCCGTGGACTTGTCAAAAACTTGCGTGATTTA
GAAACAGAGCTTGAAGAAGAACGTAAACAACGTGCAGCAGCTGTAGCGGCAAAAAAAAAA
TTGGAAGGAGATCTGAAAGATATTGAAGCTACACTCGAAATGAATAACAAGGTCAAGGAA
GATGCACTTAAACAAGCAAAAAAACTTCAAGGGCAAATGAAAGATGTTTTAAGAGAGGCC
GAGGATGCTAAAGCTGCTAAGGAGGAACTTGCTGCGCTCAGTAAAGAAGCTGAACGAAAA
ATTAAAGTACTCGAAGCTGAAGTCATTCAATTGACTGAAGATTTAGCTAGCTCAGAACGA
GCACGTCGTGCTGCAGAAGCTGAACGTGATGAATTGCAAGAAGAGATCAATAATAACTCT
AGTAAGGGTTCATTAATGATTGACGAGAAGCGTCGACTTGAAGCTCGTATTGCCGCACTC
GAAGAAGAATTGGAAGAGGAACAGTCCAACTCTGAATTACTTGTTGATCGTAATCGCAAA
GCTTTATTAAATATTGAACAAATTACAACAGAATTGGCTACAGAAAAATCAAATGCACAA
AAACATGAAAATGCAAGGACACTTCTTGAACGACAAAATAAGGATTTAAAAGCGAAATTG
GCTGAAATTGAAACCACACAACGTACGAAAGTTAAAGCTCAAATGGCGACACTTGAAGCT
AAAATTGCCAATTTGGAAGAGCAGCTTGAAAATGAGGCGAAAGAACGATTGCTGCAACAA
AAGAATAACCGCAAACTTGAAAAGAAGATAAAAGAATTGACTATGAATATTGAAGATGAA
CGCCGACACGCTGATTCATATAAAGAACAAATAGAGAAACTTAATAACCGCAACAAGATA
CTTAAACGTAACCTTGATGAAGCCGAAGAAGAAATTCAGAAGGAAAAGACCCAGAAACGA
AAAGCTCAAAGAGATATGGAGGATATGCTCGAGTCACAAGAAACTCTGAATCGTGAACTC
AACACATTGAAATCGAAATTAAGACGCGGCGCTGGTAGCTCATCCATGAATTTCAGTACA
GCAGGCAGACTTTCAACGACGCACAAACGCAATAGCGATGACAGTTCGATTCAGGATGAA
TCTTTTGATGGCCCATTAAAAATGGACGACATAATACAATAA

>g13357.t1 Gene=g13357 Length=1973
MSEDLRDRNDPELKCLSVERSNFNDPATQAEWTQKRLVWVPSDTQGFVAASIKGERGDEV
EVELTETGKRIMILKDDIQKMNPPKFDKVEDMAELTCLNEASVLHNIKDRYYSGLIYTYS
GLFCVVVNPYKKLPIYTEKIMEKYKGIKRHEVPPHVFAITDTAYRSMLQDREDQSILCTG
ESGAGKTENTKKVIQYLAYVAASKPKGSISGPSPALIIGELEQQLLQANPILEAFGNAKT
VKNDNSSRFGKFIRINFDASGYISGANIETYLLEKSRAIRQASDERTFHIFYQLLAGATA
EQRDKYILEDIKSYPFLSNGPLPVPGVDDYAEFQATVKSMGIMGMTTEDYNSIFKIVSAV
LLFGSMKFKQERNNDQATLPDNTVAQKVAHLLGLSVTDMTKAFLTPRIKVGRDYVTKAQT
KEQVEFAVEAIAKACYERLFKWLVTRINRSLDRTKRQGASFIAILDIAGFEIFQLNSYEQ
LCINYTNEKLQQLFNHTMFILEQEEYQREGIDWKFIDFGLDLQPTIDLIDKPGGIMALLD
EECWFPKATDKTFVEKLTSAHSAHPKYMKTDFRGVADFAIVHYAGRVDYSAEKWLMKNMD
PLNENVVSLLQSSADPFVVQIWKDAEIVGMAQQALSDTQFGARTRKGMFRTVSHLYKEQL
SKLMDTLKNTNPNFVRCILPNHEKRSGKIEAQLVLDQLRCNGVLEGIRICRQGFPNRIPF
QEFRQRYELLTPNVIPKGFMDGKKACEKMIQALELDNNLYRVGQSKIFFRAGVLAHLEEE
RDYKITDLIVNFQAFCRGYLARRNYQKRLQQLNAIRIIQRNCAAYLKLRNWQWWRLYTKV
KPLLEVTKQEEKLVQKEDELRQIREKLDTLSKATAEYENKYQMAIEEKTHLAEQLQAEIE
LCAEAEESRMRLASRKQELEEMMQDLEARVEEEEERVNALNNEKKKLQLNIQDLEEQLEE
EEAARQKLQLEKVQLDAKLKKYEEDVAVIDDQNQKLFKEKKLLEERANDLSQTLAEEEEK
AKHLAKLKVKHEATIAELEERLRKDHQQRQESDRTKRKIETEVADLKEQLNEKRIQIEEI
QQQLVKREEELTNTLLRIDEESAAKANAQKLQRELESQLAEVQEDLEAEKAARAKAEKQK
RDLNEELEALKNELLDSLDTTAAQQELRSKREQEVASLKKALEEEAANHEGQLQDMRHKH
SQELSAANEQLENNKKAKLALEKQKQTLEAENADLATELRNVNQSRQENDRRRKQAEQQF
SEVQMKYAELERTRSEMQEKMIKIQQEADSLAQQLEEAETKASAAIKSASTIESQLSESQ
QLLEEETRQKLALSSKLRQLESEKEALQEQLEEDLEAKKNYERKMAELTAQMQEAKKKAD
EEGEIVKELEESKKKLNKDVEALQRQIQELQAANDRLDKSKKKLQSELEDTTIELEAQRT
KVLELEKKQKVFDKVVAEEKAVSEQYAQERDAAERDAREKETKVLSLTRELDEAYEKIED
LESKRKSLQNELDELANTQGTADKNVHELEKAKRALESQLAELKAQNEELEDDLQLTEDA
KLRLEVNMQALRTQFERDLQAKEEQAEEKRRGLVKNLRDLETELEEERKQRAAAVAAKKK
LEGDLKDIEATLEMNNKVKEDALKQAKKLQGQMKDVLREAEDAKAAKEELAALSKEAERK
IKVLEAEVIQLTEDLASSERARRAAEAERDELQEEINNNSSKGSLMIDEKRRLEARIAAL
EEELEEEQSNSELLVDRNRKALLNIEQITTELATEKSNAQKHENARTLLERQNKDLKAKL
AEIETTQRTKVKAQMATLEAKIANLEEQLENEAKERLLQQKNNRKLEKKIKELTMNIEDE
RRHADSYKEQIEKLNNRNKILKRNLDEAEEEIQKEKTQKRKAQRDMEDMLESQETLNREL
NTLKSKLRRGAGSSSMNFSTAGRLSTTHKRNSDDSSIQDESFDGPLKMDDIIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
31 g13357.t1 CDD cd14911 MYSc_Myh2_insects_mollusks 101 770 0.0
26 g13357.t1 Coils Coil Coil 846 1448 -
30 g13357.t1 Coils Coil Coil 1456 1624 -
29 g13357.t1 Coils Coil Coil 1639 1757 -
28 g13357.t1 Coils Coil Coil 1765 1926 -
27 g13357.t1 Coils Coil Coil 1972 1973 -
21 g13357.t1 Gene3D G3DSA:2.30.30.360 Myosin S1 fragment 41 81 1.4E-283
23 g13357.t1 Gene3D G3DSA:3.40.850.10 Kinesin 82 711 1.4E-283
22 g13357.t1 Gene3D G3DSA:1.20.120.720 - 345 642 1.4E-283
25 g13357.t1 Gene3D G3DSA:1.20.58.530 - 470 669 1.4E-283
18 g13357.t1 Gene3D G3DSA:3.30.70.3240 - 713 782 7.8E-27
20 g13357.t1 Gene3D G3DSA:4.10.270.10 Myosin 783 841 1.7E-28
24 g13357.t1 Gene3D G3DSA:1.20.5.340 - 842 963 2.6E-15
19 g13357.t1 Gene3D G3DSA:1.20.5.1050 - 964 1079 1.7E-6
40 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1187 1262 -
41 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1187 1205 -
36 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1215 1229 -
35 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1244 1259 -
43 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1301 1327 -
45 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1304 1322 -
44 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1463 1483 -
38 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1695 1723 -
39 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1696 1716 -
34 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1889 1912 -
42 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1926 1973 -
37 g13357.t1 MobiDBLite mobidb-lite consensus disorder prediction 1927 1946 -
5 g13357.t1 PANTHER PTHR45615:SF16 MYOSIN-9 14 1938 0.0
6 g13357.t1 PANTHER PTHR45615 MYOSIN HEAVY CHAIN, NON-MUSCLE 14 1938 0.0
8 g13357.t1 PRINTS PR00193 Myosin heavy chain signature 117 136 3.5E-68
11 g13357.t1 PRINTS PR00193 Myosin heavy chain signature 173 198 3.5E-68
10 g13357.t1 PRINTS PR00193 Myosin heavy chain signature 230 257 3.5E-68
7 g13357.t1 PRINTS PR00193 Myosin heavy chain signature 461 489 3.5E-68
9 g13357.t1 PRINTS PR00193 Myosin heavy chain signature 515 543 3.5E-68
4 g13357.t1 Pfam PF02736 Myosin N-terminal SH3-like domain 35 72 3.7E-11
1 g13357.t1 Pfam PF00063 Myosin head (motor domain) 89 770 0.0
3 g13357.t1 Pfam PF00612 IQ calmodulin-binding motif 788 806 8.3E-5
2 g13357.t1 Pfam PF01576 Myosin tail 847 1927 0.0
48 g13357.t1 ProSiteProfiles PS51844 Myosin N-terminal SH3-like domain profile. 33 83 19.017
46 g13357.t1 ProSiteProfiles PS51456 Myosin motor domain profile. 87 782 273.565
47 g13357.t1 ProSiteProfiles PS50096 IQ motif profile. 785 814 10.621
33 g13357.t1 SMART SM00242 MYSc_2a 81 783 0.0
32 g13357.t1 SMART SM00015 iq_5 784 806 2.0E-4
17 g13357.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 59 841 1.5E-289
16 g13357.t1 SUPERFAMILY SSF90257 Myosin rod fragments 842 967 3.53E-20
13 g13357.t1 SUPERFAMILY SSF90257 Myosin rod fragments 962 1076 8.2E-19
12 g13357.t1 SUPERFAMILY SSF90257 Myosin rod fragments 1239 1353 3.92E-15
15 g13357.t1 SUPERFAMILY SSF90257 Myosin rod fragments 1356 1450 1.96E-5
14 g13357.t1 SUPERFAMILY SSF90257 Myosin rod fragments 1464 1576 4.45E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051015 actin filament binding MF
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0016459 myosin complex CC
GO:0003774 cytoskeletal motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values