Gene loci information

Transcript annotation

  • This transcript has been annotated as Myosin heavy chain, non-muscle.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13357 g13357.t3 isoform g13357.t3 29501749 29507532
chr_1 g13357 g13357.t3 exon g13357.t3.exon1 29501749 29501974
chr_1 g13357 g13357.t3 cds g13357.t3.CDS1 29501814 29501974
chr_1 g13357 g13357.t3 exon g13357.t3.exon2 29503732 29503888
chr_1 g13357 g13357.t3 cds g13357.t3.CDS2 29503732 29503888
chr_1 g13357 g13357.t3 exon g13357.t3.exon3 29504477 29504692
chr_1 g13357 g13357.t3 cds g13357.t3.CDS3 29504477 29504692
chr_1 g13357 g13357.t3 exon g13357.t3.exon4 29507398 29507532
chr_1 g13357 g13357.t3 cds g13357.t3.CDS4 29507398 29507532
chr_1 g13357 g13357.t3 TSS g13357.t3 29508042 29508042
chr_1 g13357 g13357.t3 TTS g13357.t3 NA NA

Sequences

>g13357.t3 Gene=g13357 Length=734
ATGTCGGAGGATTTAAGAGACCGCAATGATCCAGAATTAAAGTGTCTTAGTGTCGAAAGG
AGCAATTTTAATGATCCCGCGACACAAGCTGAATGGACTCAGAAACGCCTTGTCTGGGTT
CCATCAGACACTCAAGGATTCGTTGCGGCGAGCATCAAAGGAGAACGTGGCGATGAAGTC
GAAGTAGAATTAACTGAGACTGGAAAACGCATAATGATACTTAAAGATGACATACAAAAA
ATGAATCCGCCAAAATTTGACAAAGTCGAAGATATGGCCGAATTGACTTGCCTGAATGAA
GCATCAGTCTTACACAACATCAAAGACCGATATTATTCGGGATTGATTTATACTTATTCA
GGACTTTTCTGCGTTGTTGTAAATCCATATAAGAAACTTCCAATTTATACTGAGAAAATT
ATGGAAAAATATAAGGGAATTAAGCGACATGAAGTTCCACCACATGTTTTTGCAATCACT
GATACAGCTTATCGATCTATGCTTCAAGATCGCGAGGATCAATCGATTCTTTGTACAGGT
GAATCAGGAGCTGGCAAGACGGAAAATACAAAAAAAGTTATTCAATATTTGGCATATGTA
GCTGCATCAAAGCCAAAGGGTTCTATTTCTGTAAGTATATTGCATTATTATGCAGTGCAT
GCAATTTGAATTTCCATATATTTAATAAATGCTCATTCTTTTCATATTAGGGGCCCAGTC
CAGCTTTAATAATT

>g13357.t3 Gene=g13357 Length=222
MSEDLRDRNDPELKCLSVERSNFNDPATQAEWTQKRLVWVPSDTQGFVAASIKGERGDEV
EVELTETGKRIMILKDDIQKMNPPKFDKVEDMAELTCLNEASVLHNIKDRYYSGLIYTYS
GLFCVVVNPYKKLPIYTEKIMEKYKGIKRHEVPPHVFAITDTAYRSMLQDREDQSILCTG
ESGAGKTENTKKVIQYLAYVAASKPKGSISVSILHYYAVHAI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13357.t3 Gene3D G3DSA:2.30.30.360 Myosin S1 fragment 32 82 0.0000000
9 g13357.t3 Gene3D G3DSA:3.40.850.10 Kinesin 83 216 0.0000000
3 g13357.t3 PANTHER PTHR45615:SF16 MYOSIN-9 14 204 0.0000000
4 g13357.t3 PANTHER PTHR45615 MYOSIN HEAVY CHAIN, NON-MUSCLE 14 204 0.0000000
5 g13357.t3 PRINTS PR00193 Myosin heavy chain signature 117 136 0.0000000
6 g13357.t3 PRINTS PR00193 Myosin heavy chain signature 173 198 0.0000000
2 g13357.t3 Pfam PF02736 Myosin N-terminal SH3-like domain 35 72 0.0000000
1 g13357.t3 Pfam PF00063 Myosin head (motor domain) 89 212 0.0000000
12 g13357.t3 ProSiteProfiles PS51844 Myosin N-terminal SH3-like domain profile. 33 83 19.0170000
11 g13357.t3 ProSiteProfiles PS51456 Myosin motor domain profile. 87 222 60.2360000
8 g13357.t3 SMART SM00242 MYSc_2a 81 221 0.0000017
7 g13357.t3 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 59 206 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051015 actin filament binding MF
GO:0005524 ATP binding MF
GO:0016459 myosin complex CC
GO:0003774 cytoskeletal motor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed