General information for g13357.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Myosin heavy chain, non-muscle.
Parent gene
- The parent gene g13357 is located on chr_1: 29507532..29507964 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13357 | g13357.t4 | TTS | g13357.t4 | 29501922 | 29501922 |
| chr_1 | g13357 | g13357.t4 | isoform | g13357.t4 | 29502943 | 29507532 |
| chr_1 | g13357 | g13357.t4 | exon | g13357.t4.exon1 | 29502943 | 29503888 |
| chr_1 | g13357 | g13357.t4 | cds | g13357.t4.CDS1 | 29503721 | 29503888 |
| chr_1 | g13357 | g13357.t4 | exon | g13357.t4.exon2 | 29504477 | 29504692 |
| chr_1 | g13357 | g13357.t4 | cds | g13357.t4.CDS2 | 29504477 | 29504692 |
| chr_1 | g13357 | g13357.t4 | exon | g13357.t4.exon3 | 29507398 | 29507532 |
| chr_1 | g13357 | g13357.t4 | cds | g13357.t4.CDS3 | 29507398 | 29507532 |
| chr_1 | g13357 | g13357.t4 | TSS | g13357.t4 | 29508042 | 29508042 |
Sequences
>g13357.t4 Gene=g13357 Length=1297
ATGTCGGAGGATTTAAGAGACCGCAATGATCCAGAATTAAAGTGTCTTAGTGTCGAAAGG
AGCAATTTTAATGATCCCGCGACACAAGCTGAATGGACTCAGAAACGCCTTGTCTGGGTT
CCATCAGACACTCAAGGATTCGTTGCGGCGAGCATCAAAGGAGAACGTGGCGATGAAGTC
GAAGTAGAATTAACTGAGACTGGAAAACGCATAATGATACTTAAAGATGACATACAAAAA
ATGAATCCGCCAAAATTTGACAAAGTCGAAGATATGGCCGAATTGACTTGCCTGAATGAA
GCATCAGTCTTACACAACATCAAAGACCGATATTATTCGGGATTGATTTATACTTATTCA
GGACTTTTCTGCGTTGTTGTAAATCCATATAAGAAACTTCCAATTTATACTGAGAAAATT
ATGGAAAAATATAAGGGAATTAAGCGACATGAAGTTCCACCACATGTTTTTGCAATCACT
GATACAGCTTATCGATCTATGCTTCAAGGTAATGATTGATTTTTAATTTCAATCCCAGCT
ATGAAGTTTTCATTCACCATAATTTCTTCATCATTCGATTCAATATAATTTTTTGCTATT
TCTCATCACAAAAAATGAAATCGTCAATTTCTTTCAAATCAAAAAGTAGTGAAAAAGAAA
GATTTTGATGCAACAGCAGACGTAAAAAATATATCGGCCACATTAAATCGAAAATGTGTG
CTACGTGTTGTCATATTATGGCATTAATCAATTATTATTCGCCATCAGTGTACTCTATCT
TACATGTATATCTTTAGCGGCATATGTTTATAAATTTATTTTATCTGCTTACTATGCATA
TTTATATGAGCGCATTTGGTAATATAGTTTTCTTAAAAGAAATTAGGCATTATGTTTTTC
TATCTCTCTAATTCATTTTTTGTGAATAATAATAAAAAGAAAGAGCTACAACCACGACAA
CAGTAGCAGCACAAGCAGACTAGCAAGCTAGGCAGAAAAAGTAACATTTGAGTAAGATGA
ATAATCCCGTTCCCGAAGTGAGAACCCCTAATTATGTGGACGACCTTAAATCATTTATAG
AGTGAGTGAGTGAGAAAAATAATCGCAAATACATACCAAAAAAGTGTACACATGAGAAAT
AATAGTGAAATAAAAAAAATTGACTTGAGCTTGACGCGCTTGATGATGGGGGCATGAGAA
GGAGAAGGCTCCTTGTGATAAAATAAAGTATTACCAAAAATGGAAAAAAATATGAAAAAA
ATGCTACGGAATGCCTCGGCATGTTTATATAATATAA
>g13357.t4 Gene=g13357 Length=172
MSEDLRDRNDPELKCLSVERSNFNDPATQAEWTQKRLVWVPSDTQGFVAASIKGERGDEV
EVELTETGKRIMILKDDIQKMNPPKFDKVEDMAELTCLNEASVLHNIKDRYYSGLIYTYS
GLFCVVVNPYKKLPIYTEKIMEKYKGIKRHEVPPHVFAITDTAYRSMLQGND
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13357.t4 | Gene3D | G3DSA:2.30.30.360 | Myosin S1 fragment | 32 | 82 | 0.000 |
| 6 | g13357.t4 | Gene3D | G3DSA:3.40.850.10 | Kinesin | 83 | 172 | 0.000 |
| 3 | g13357.t4 | PANTHER | PTHR45615:SF16 | MYOSIN-9 | 14 | 170 | 0.000 |
| 4 | g13357.t4 | PANTHER | PTHR45615 | MYOSIN HEAVY CHAIN, NON-MUSCLE | 14 | 170 | 0.000 |
| 2 | g13357.t4 | Pfam | PF02736 | Myosin N-terminal SH3-like domain | 35 | 72 | 0.000 |
| 1 | g13357.t4 | Pfam | PF00063 | Myosin head (motor domain) | 89 | 169 | 0.000 |
| 9 | g13357.t4 | ProSiteProfiles | PS51844 | Myosin N-terminal SH3-like domain profile. | 33 | 83 | 19.017 |
| 8 | g13357.t4 | ProSiteProfiles | PS51456 | Myosin motor domain profile. | 87 | 172 | 43.681 |
| 5 | g13357.t4 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 59 | 170 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051015 | actin filament binding | MF |
| GO:0005524 | ATP binding | MF |
| GO:0016459 | myosin complex | CC |
| GO:0003774 | cytoskeletal motor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
