Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13362 g13362.t8 isoform g13362.t8 29516041 29518346
chr_1 g13362 g13362.t8 exon g13362.t8.exon1 29516041 29516378
chr_1 g13362 g13362.t8 exon g13362.t8.exon2 29517064 29517375
chr_1 g13362 g13362.t8 cds g13362.t8.CDS1 29517107 29517375
chr_1 g13362 g13362.t8 exon g13362.t8.exon3 29517891 29518346
chr_1 g13362 g13362.t8 cds g13362.t8.CDS2 29517891 29518344
chr_1 g13362 g13362.t8 TSS g13362.t8 NA NA
chr_1 g13362 g13362.t8 TTS g13362.t8 NA NA

Sequences

>g13362.t8 Gene=g13362 Length=1106
ATGGTGAGAGAAATTTTCCGCAATTCTTACTCTCATTCCTCTCTTCGCAGCATGTTAAGC
ATGAGTATTTTTATCTTCTTAATTTTTTTTTCATTTCTACCTATTACTCGTACGATATAT
CCACGCGTTACGATTTGCACTCTTCAGTTCTATTTTATCGTTCAAACTATTCAGACGTGT
ATCGTTTTTGTATGATTCATTTTATGCGGTCTTATATTGCAATAGTTATGTGATGTTTAA
AAAGTTATTCAATAATAAAATTATCAAGTATTTTTATTAAAATAAAAGTGATAGTCATTA
CAATTGTGATTTATTTCAAAATAGATCTCTGTTCAAAGGAATATTGTATTACAAATATTT
AATAAACAAGTGGACAAAGTGATGACGAACATTTATCATGAAAAATATTTTTTCTTATAC
ATCATTGTCTTTATAATATGCATTATCAATCAATGTACAAGCATTAGTGATTTAAATCAT
TCAAATTATAAAAATGAAAATAAAAATTTCACACATCATCAGCAAAAAGACAATTTTCTT
ATCATTGATCATCTCAATGATAACGAACGAGAGACGAGACTAAAATGGAAAAATCTCATG
GGAAAGGAAACGACACTTGATATGGACAACAATGAAAGATTTGTTAACAGTTCTTTGAAA
TTAACGTCTCTATGGCAACTGACAGATGGCAAAGATTTTGCACAACTCATTTTTAATGGT
AATAGTCTCATCGATTGTGAAAATATTGATAATGGAAATGATATCATTGGTGATTTCGTG
AGTAAATTCATTGAAGAATATCAATTTATCCGTCATGAGAAATTAAGTAGTACAAAACAT
GCAAAGAAGCATCATCAATACCAACAGAATGCGAATCTTAATGAAGAAGTACTTAAAATG
AAGTCAAATGTAAAGTTTATTCAACTGAAAAAATTACAAGATATTCCCGAGCATTTACTC
AGGCTCATGAATTTGAAAAAATTGAAAAAACAATGCAATCGTTTGCATAAAAAAATAAAA
CAAAAATTGCAACAACAACATCATCATCATACGGTCGATGAAGAAGAAGATGAAGAAGAT
TTTAATGCCAAAAATGAAAATATGAT

>g13362.t8 Gene=g13362 Length=241
MTNIYHEKYFFLYIIVFIICIINQCTSISDLNHSNYKNENKNFTHHQQKDNFLIIDHLND
NERETRLKWKNLMGKETTLDMDNNERFVNSSLKLTSLWQLTDGKDFAQLIFNGNSLIDCE
NIDNGNDIIGDFVSKFIEEYQFIRHEKLSSTKHAKKHHQYQQNANLNEEVLKMKSNVKFI
QLKKLQDIPEHLLRLMNLKKLKKQCNRLHKKIKQKLQQQHHHHTVDEEEDEEDFNAKNEN
M

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g13362.t8 Coils Coil Coil 163 183 -
3 g13362.t8 Coils Coil Coil 195 218 -
2 g13362.t8 MobiDBLite mobidb-lite consensus disorder prediction 214 241 -
5 g13362.t8 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 8 -
7 g13362.t8 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 9 29 -
6 g13362.t8 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 30 241 -
1 g13362.t8 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 9 28 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed