Gene loci information

Transcript annotation

  • This transcript has been not been annotated.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13373 g13373.t1 TTS g13373.t1 29584047 29584047
chr_1 g13373 g13373.t1 isoform g13373.t1 29584238 29585403
chr_1 g13373 g13373.t1 exon g13373.t1.exon1 29584238 29584314
chr_1 g13373 g13373.t1 cds g13373.t1.CDS1 29584238 29584314
chr_1 g13373 g13373.t1 exon g13373.t1.exon2 29584381 29584443
chr_1 g13373 g13373.t1 cds g13373.t1.CDS2 29584381 29584443
chr_1 g13373 g13373.t1 exon g13373.t1.exon3 29584742 29584811
chr_1 g13373 g13373.t1 cds g13373.t1.CDS3 29584742 29584811
chr_1 g13373 g13373.t1 exon g13373.t1.exon4 29585066 29585110
chr_1 g13373 g13373.t1 cds g13373.t1.CDS4 29585066 29585110
chr_1 g13373 g13373.t1 exon g13373.t1.exon5 29585389 29585403
chr_1 g13373 g13373.t1 cds g13373.t1.CDS5 29585389 29585403
chr_1 g13373 g13373.t1 TSS g13373.t1 29585493 29585493

Sequences

>g13373.t1 Gene=g13373 Length=270
ATGGGCCTTAAGGAGGATTTTGACGCTGCTGCAGAGCAAGTAAAGAACTTGAAAGCAAAG
CCATCAGATCAAGATCTACTCGAACTTTATTCATTATTCAAACAAGCTACAGTTGGTGAT
AATAATACAGAAAAACCTGGTATGCTAGATTTTAAAGGCAAAGCCAAATGGGAAGCATGG
AACTCAAGAAAGGGAATGTCTGCTGATGATGCAATGACTAAGTATATAGAGAAAGTCAAT
TCACTCGTTGCATCGCTCGGTGTCAACTAG

>g13373.t1 Gene=g13373 Length=89
MGLKEDFDAAAEQVKNLKAKPSDQDLLELYSLFKQATVGDNNTEKPGMLDFKGKAKWEAW
NSRKGMSADDAMTKYIEKVNSLVASLGVN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13373.t1 CDD cd00435 ACBP 3 87 4.52056E-42
9 g13373.t1 Gene3D G3DSA:1.20.80.10 - 1 88 6.8E-37
2 g13373.t1 PANTHER PTHR23310:SF54 ACYL-COA-BINDING PROTEIN 4 87 1.8E-33
3 g13373.t1 PANTHER PTHR23310 ACYL-COA-BINDING PROTEIN, ACBP 4 87 1.8E-33
4 g13373.t1 PRINTS PR00689 Acyl-coA-binding protein signature 4 19 6.2E-29
7 g13373.t1 PRINTS PR00689 Acyl-coA-binding protein signature 21 39 6.2E-29
6 g13373.t1 PRINTS PR00689 Acyl-coA-binding protein signature 44 59 6.2E-29
5 g13373.t1 PRINTS PR00689 Acyl-coA-binding protein signature 65 82 6.2E-29
1 g13373.t1 Pfam PF00887 Acyl CoA binding protein 5 83 3.6E-31
11 g13373.t1 ProSitePatterns PS00880 Acyl-CoA-binding (ACB) domain signature. 21 39 -
12 g13373.t1 ProSiteProfiles PS51228 Acyl-CoA-binding (ACB) domain profile. 3 88 46.562
8 g13373.t1 SUPERFAMILY SSF47027 Acyl-CoA binding protein 3 85 2.22E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000062 fatty-acyl-CoA binding MF

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values