General information for g13377.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Epoxide hydrolase 4.
Parent gene
- The parent gene g13377 is located on chr_1: 29604587..29606004 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13377 | g13377.t8 | TTS | g13377.t8 | 29604474 | 29604474 |
| chr_1 | g13377 | g13377.t8 | isoform | g13377.t8 | 29604587 | 29606004 |
| chr_1 | g13377 | g13377.t8 | exon | g13377.t8.exon1 | 29604587 | 29605056 |
| chr_1 | g13377 | g13377.t8 | cds | g13377.t8.CDS1 | 29604587 | 29605056 |
| chr_1 | g13377 | g13377.t8 | exon | g13377.t8.exon2 | 29605119 | 29605223 |
| chr_1 | g13377 | g13377.t8 | cds | g13377.t8.CDS2 | 29605119 | 29605223 |
| chr_1 | g13377 | g13377.t8 | exon | g13377.t8.exon3 | 29605502 | 29605711 |
| chr_1 | g13377 | g13377.t8 | cds | g13377.t8.CDS3 | 29605502 | 29605538 |
| chr_1 | g13377 | g13377.t8 | exon | g13377.t8.exon4 | 29605879 | 29606004 |
| chr_1 | g13377 | g13377.t8 | TSS | g13377.t8 | 29606084 | 29606084 |
Sequences
>g13377.t8 Gene=g13377 Length=911
ATGACCACACCAATTGATGTGATAAAATTTTTAGTCTTTAATTTTTTGACAATTTTTTAC
TCGGCTTGTATTGGTATTACTATCGTGATAAATTACATATTTAATTCTAAATCACGTTTT
TGGGAAGCAATCCAACTAAACCATTGATTGTTTTCGTTCATGGTTTTCCAGAGTTTTGGT
ATAGTTGGCGGCATCAAATTAAAGAATTTAGTAAAGATTATTGGACGATAACAATTGATC
AGCGTGGATATGGAGATTCAGAAAAGCCAAGTAAAATTTCTGAATATCATATCAATAACA
TGGCTGATGATATACGTGCACTAGTAAAGAAGTTGGGTAGAGAAAAATTTATACTTATTG
CTCATGACTGGGGTGCTGCAGTTGGTTTCAACTATGTTTATCGTTATATGGACACAATTG
AAAAATATGTTATGATAGGAGGCCCACCTAGTGAAGCATGGAAAAAATTGATTGTCAGTT
CACCAAAACAATTTATTATGAGTTGGTACATTTTTTTCTTTCAAATGCCTTGGCTTCCTG
AATTTGTCATTCGTTGTAACGATTTGAAATCGTTTGATACTATGAGATTGGGTTCAAAGG
AAGACGTTGAATGCTTCAAATATACTTTTTCTAAACCAGGTGCATTAACTTCACCAATTA
ATTATTATCGTGCAATAAAAGTGTTAAACCCTGACCCTCCATTAAAGAAGCCAGCAAATT
GTGCACCAGGACTTTTTTTGTTGGGCGAATATGATAAATATATAGCACGCTCGACAGGAA
AGTTAGCTAAGGCTGAACTTGATAATTTAGATTTTAAACTAATTATGAGTGCAAACCATT
TTGCACAACAACATAAACCAGAAGAAACAAATCGCATGATTCGTGAATTTCTTGATAAGA
AAATGCAGTAA
>g13377.t8 Gene=g13377 Length=203
MADDIRALVKKLGREKFILIAHDWGAAVGFNYVYRYMDTIEKYVMIGGPPSEAWKKLIVS
SPKQFIMSWYIFFFQMPWLPEFVIRCNDLKSFDTMRLGSKEDVECFKYTFSKPGALTSPI
NYYRAIKVLNPDPPLKKPANCAPGLFLLGEYDKYIARSTGKLAKAELDNLDFKLIMSANH
FAQQHKPEETNRMIREFLDKKMQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g13377.t8 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 199 | 0.0e+00 |
| 2 | g13377.t8 | PANTHER | PTHR43329 | EPOXIDE HYDROLASE | 4 | 199 | 0.0e+00 |
| 3 | g13377.t8 | PANTHER | PTHR43329:SF17 | EPOXIDE HYDROLASE 1 | 4 | 199 | 0.0e+00 |
| 6 | g13377.t8 | PRINTS | PR00412 | Epoxide hydrolase signature | 19 | 32 | 1.7e-06 |
| 5 | g13377.t8 | PRINTS | PR00412 | Epoxide hydrolase signature | 142 | 158 | 1.7e-06 |
| 4 | g13377.t8 | PRINTS | PR00412 | Epoxide hydrolase signature | 175 | 197 | 1.7e-06 |
| 1 | g13377.t8 | Pfam | PF00561 | alpha/beta hydrolase fold | 1 | 64 | 0.0e+00 |
| 7 | g13377.t8 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 1 | 200 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed