Gene loci information

Transcript annotation

  • This transcript has been annotated as Juvenile hormone epoxide hydrolase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13392 g13392.t2 isoform g13392.t2 29679145 29681799
chr_1 g13392 g13392.t2 exon g13392.t2.exon1 29679145 29679370
chr_1 g13392 g13392.t2 exon g13392.t2.exon2 29680635 29680740
chr_1 g13392 g13392.t2 cds g13392.t2.CDS1 29680635 29680740
chr_1 g13392 g13392.t2 exon g13392.t2.exon3 29680895 29680983
chr_1 g13392 g13392.t2 cds g13392.t2.CDS2 29680895 29680983
chr_1 g13392 g13392.t2 exon g13392.t2.exon4 29681227 29681432
chr_1 g13392 g13392.t2 cds g13392.t2.CDS3 29681227 29681432
chr_1 g13392 g13392.t2 exon g13392.t2.exon5 29681507 29681799
chr_1 g13392 g13392.t2 cds g13392.t2.CDS4 29681507 29681798
chr_1 g13392 g13392.t2 TSS g13392.t2 NA NA
chr_1 g13392 g13392.t2 TTS g13392.t2 NA NA

Sequences

>g13392.t2 Gene=g13392 Length=920
ATGTTTCATATAAGCATCACCATCATCAAAATATATCGTTGTATACACATCACTACACAT
ACTAGAATACCTTTTTTACATGTGAGTAAAATTATTTTGTTTATTAACATCCCAATATAA
ATGTTCACTTTATCATCAGTTAAATTCAGTACGCGTTAGACTAGAAACGCCGGTAAGCCA
GAATATCTACCATAGAGTGAGGAGAAGAAAAAAAACCACAGAAAAGATGGGAGCACTGAA
AAATGTTTTCTACAGTGCGTTGGCACTTGCAATCGCATTTTCTTATCAGACTTATAGAGA
TTTAACAAAGCCATTTCCAAGACCCGAATTAGATTTAAACGAATATTGGGGTCGTGGAAA
TGCGAAGAACTATAAAGAAGATAAAACGATTAAACCATTCAAAATTTCATATTCTGCTGA
GGTAATAAAACGTTTAACGGATAAACTCAGTGATGGGCAAGCTCAAGCCTTTACCGAGCC
ACTCGAAAATACAGCATTTGAATATGGATTTAATACGAAGCACTTACAAGTTGTATTAAA
TTATTGGAAAGACCAATATCTGCCGAAATGGAATGAACGTGAACAGTTTTTGAATCAGTT
TCCGCAATTTACCACACAAATACAAGGCTTAAATATTCATTTTATTCATGCAAAACCAAC
AAAGACAAATGCAAATACCAAAGTTTTTCCATTGATTTTACTTCATGGTTGGCCAGGATC
AGTGCGTGAATTCTATGACATTATTCCATTGCTAACAACTCCTTCAAAAGATAACATAGC
GTTTGAAGTCATTGCCCCGTCATTACCTGGTTATGGTTGGAGTGAAGCTGCAAAAAAACA
AGGATTGGGTGCAGTTCGTATTGCTGTTATTTTTAGAAATCTCATGAAACGACTCGGAAT
TGAAAAATATTATATACAAG

>g13392.t2 Gene=g13392 Length=231
MGALKNVFYSALALAIAFSYQTYRDLTKPFPRPELDLNEYWGRGNAKNYKEDKTIKPFKI
SYSAEVIKRLTDKLSDGQAQAFTEPLENTAFEYGFNTKHLQVVLNYWKDQYLPKWNEREQ
FLNQFPQFTTQIQGLNIHFIHAKPTKTNANTKVFPLILLHGWPGSVREFYDIIPLLTTPS
KDNIAFEVIAPSLPGYGWSEAAKKQGLGAVRIAVIFRNLMKRLGIEKYYIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g13392.t2 Gene3D G3DSA:3.40.50.1820 - 35 231 2.1E-64
2 g13392.t2 PANTHER PTHR21661:SF35 EPOXIDE HYDROLASE 11 231 2.7E-73
3 g13392.t2 PANTHER PTHR21661 EPOXIDE HYDROLASE 1-RELATED 11 231 2.7E-73
5 g13392.t2 PRINTS PR00412 Epoxide hydrolase signature 160 178 2.1E-7
4 g13392.t2 PRINTS PR00412 Epoxide hydrolase signature 185 200 2.1E-7
1 g13392.t2 Pfam PF06441 Epoxide hydrolase N terminus 55 169 5.3E-29
10 g13392.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
11 g13392.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 6 -
12 g13392.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 7 14 -
13 g13392.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 19 -
9 g13392.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 231 -
6 g13392.t2 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 46 231 3.12E-47
7 g13392.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values