General information for g13392.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Juvenile hormone epoxide hydrolase 2.
Parent gene
- The parent gene g13392 is located on chr_1: 29681795..29683114 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13392 | g13392.t4 | isoform | g13392.t4 | 29679145 | 29683114 |
| chr_1 | g13392 | g13392.t4 | exon | g13392.t4.exon1 | 29679145 | 29679351 |
| chr_1 | g13392 | g13392.t4 | exon | g13392.t4.exon2 | 29680635 | 29680740 |
| chr_1 | g13392 | g13392.t4 | exon | g13392.t4.exon3 | 29680895 | 29680970 |
| chr_1 | g13392 | g13392.t4 | exon | g13392.t4.exon4 | 29681227 | 29681432 |
| chr_1 | g13392 | g13392.t4 | exon | g13392.t4.exon5 | 29681507 | 29681799 |
| chr_1 | g13392 | g13392.t4 | cds | g13392.t4.CDS1 | 29681763 | 29681799 |
| chr_1 | g13392 | g13392.t4 | exon | g13392.t4.exon6 | 29682059 | 29682121 |
| chr_1 | g13392 | g13392.t4 | cds | g13392.t4.CDS2 | 29682059 | 29682121 |
| chr_1 | g13392 | g13392.t4 | exon | g13392.t4.exon7 | 29682474 | 29683114 |
| chr_1 | g13392 | g13392.t4 | cds | g13392.t4.CDS3 | 29682474 | 29683114 |
| chr_1 | g13392 | g13392.t4 | TTS | g13392.t4 | 29683187 | 29683187 |
| chr_1 | g13392 | g13392.t4 | TSS | g13392.t4 | NA | NA |
Sequences
>g13392.t4 Gene=g13392 Length=1592
ATGTTTCATATAAGCATCACCATCATCAAAATATATCGTTGTATACACATCACTACACAT
ACTAGAATACCTTTTTTACATGTGAGTAAAATTATTTTGTTTATTAACATCCCAATATAA
ATGTTCACTTTATCATCAGTTAAATTCAGTACGCGTTAGACTAGAAACGCCGGTAAGCCA
GAATATCTACCATAGAGTGAGGAGAAGATGGGAGCACTGAAAAATGTTTTCTACAGTGCG
TTGGCACTTGCAATCGCATTTTCTTATCAGACTTATAGAGATTTAACAAAGCCATTTCCA
AGACCCGAATTAGATTTAAACGAATATTGGGGTCGTGGAAATGCGAAGAACTATAAAGAA
GATAAAACGATTAAACCATTCAAAATTTCGTAATAAAACGTTTAACGGATAAACTCAGTG
ATGGGCAAGCTCAAGCCTTTACCGAGCCACTCGAAAATACAGCATTTGAATATGGATTTA
ATACGAAGCACTTACAAGTTGTATTAAATTATTGGAAAGACCAATATCTGCCGAAATGGA
ATGAACGTGAACAGTTTTTGAATCAGTTTCCGCAATTTACCACACAAATACAAGGCTTAA
ATATTCATTTTATTCATGCAAAACCAACAAAGACAAATGCAAATACCAAAGTTTTTCCAT
TGATTTTACTTCATGGTTGGCCAGGATCAGTGCGTGAATTCTATGACATTATTCCATTGC
TAACAACTCCTTCAAAAGATAACATAGCGTTTGAAGTCATTGCCCCGTCATTACCTGGTT
ATGGTTGGAGTGAAGCTGCAAAAAAACAAGGATTGGGTGCAGTTCGTATTGCTGTTATTT
TTAGAAATCTCATGAAACGACTCGGAATTGAAAAATATTATATACAAGGTGGAGATTGGG
GCTCACTCATTGGAATAAATATGGCAACACTCTTTCCTGAGAATGTTTTAGGCTACCATA
CAAACATGTGCGGAATAAACACACCTATGGCTAACATCAAAATGTTTATTGCATCGTTTT
ATCCTTCATACTTTATGGATGAGAAATACGTCAGCTGGGTGTATCCATTTTGGCCGAAAT
TTGTAGATTTGTTACAAGAGAGCGGCTATATGCATATTCAAGCAACTAAGCCCGATACAA
TTGGTGTTGCATTGAACAATAATCCAATTGGTCTTGCAGCATACATACTCGAGAAATTTT
CGACATGGACAAACAAGGACTATCGAAAACTTGCTGATGGTGGACTTGAAAAATATTTTA
CAATGGATGCATTGCTGGATAATGTCATGATTTATTATCTCACAAATTCTATCACGACAT
CGCAGCGAATTTACAAGGAAGTTTTTGGCGATGAATTTGTAAATTTGCCTCTTGATAGAG
TTCCATTGGAAATTCCATCAGCATGTGCTAATTTCAAAAATGAACTCTTGACTACTCCAG
AATTTACTCTGAAAGAAAAACATAAATTTTTATTACAATCAAATTATTATGAGGATGGCG
GTCATTTTGCTGCTATGCAACTACCAAAAGTTCTTTATAATGACATTATTGAATTTATAC
GAAAAACATTGGAACAAAAAAATCAAAATTAA
>g13392.t4 Gene=g13392 Length=246
MKRLGIEKYYIQGGDWGSLIGINMATLFPENVLGYHTNMCGINTPMANIKMFIASFYPSY
FMDEKYVSWVYPFWPKFVDLLQESGYMHIQATKPDTIGVALNNNPIGLAAYILEKFSTWT
NKDYRKLADGGLEKYFTMDALLDNVMIYYLTNSITTSQRIYKEVFGDEFVNLPLDRVPLE
IPSACANFKNELLTTPEFTLKEKHKFLLQSNYYEDGGHFAAMQLPKVLYNDIIEFIRKTL
EQKNQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g13392.t4 | Coils | Coil | Coil | 237 | 246 | - |
| 9 | g13392.t4 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 245 | 4.2E-65 |
| 2 | g13392.t4 | PANTHER | PTHR21661:SF35 | EPOXIDE HYDROLASE | 1 | 244 | 1.9E-90 |
| 3 | g13392.t4 | PANTHER | PTHR21661 | EPOXIDE HYDROLASE 1-RELATED | 1 | 244 | 1.9E-90 |
| 7 | g13392.t4 | PRINTS | PR00412 | Epoxide hydrolase signature | 11 | 24 | 2.3E-10 |
| 6 | g13392.t4 | PRINTS | PR00412 | Epoxide hydrolase signature | 25 | 38 | 2.3E-10 |
| 4 | g13392.t4 | PRINTS | PR00412 | Epoxide hydrolase signature | 181 | 197 | 2.3E-10 |
| 5 | g13392.t4 | PRINTS | PR00412 | Epoxide hydrolase signature | 213 | 235 | 2.3E-10 |
| 1 | g13392.t4 | Pfam | PF00561 | alpha/beta hydrolase fold | 2 | 155 | 2.9E-6 |
| 8 | g13392.t4 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 1 | 238 | 1.12E-41 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed