Gene loci information

Transcript annotation

  • This transcript has been annotated as Juvenile hormone epoxide hydrolase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13392 g13392.t5 TSS g13392.t5 29679282 29679282
chr_1 g13392 g13392.t5 isoform g13392.t5 29679284 29682574
chr_1 g13392 g13392.t5 exon g13392.t5.exon1 29679284 29679377
chr_1 g13392 g13392.t5 exon g13392.t5.exon2 29680635 29680740
chr_1 g13392 g13392.t5 cds g13392.t5.CDS1 29680635 29680740
chr_1 g13392 g13392.t5 exon g13392.t5.exon3 29680895 29680983
chr_1 g13392 g13392.t5 cds g13392.t5.CDS2 29680895 29680983
chr_1 g13392 g13392.t5 exon g13392.t5.exon4 29681227 29681432
chr_1 g13392 g13392.t5 cds g13392.t5.CDS3 29681227 29681432
chr_1 g13392 g13392.t5 exon g13392.t5.exon5 29681507 29681799
chr_1 g13392 g13392.t5 cds g13392.t5.CDS4 29681507 29681799
chr_1 g13392 g13392.t5 exon g13392.t5.exon6 29682059 29682121
chr_1 g13392 g13392.t5 cds g13392.t5.CDS5 29682059 29682121
chr_1 g13392 g13392.t5 exon g13392.t5.exon7 29682474 29682574
chr_1 g13392 g13392.t5 cds g13392.t5.CDS6 29682474 29682574
chr_1 g13392 g13392.t5 TTS g13392.t5 29683187 29683187

Sequences

>g13392.t5 Gene=g13392 Length=952
TTAAATTCAGTACGCGTTAGACTAGAAACGCCGGTAAGCCAGAATATCTACCATAGAGTG
AGGAGAAGAAAAAAAACCACAGAAAAGGTTCGAAATGGGAGCACTGAAAAATGTTTTCTA
CAGTGCGTTGGCACTTGCAATCGCATTTTCTTATCAGACTTATAGAGATTTAACAAAGCC
ATTTCCAAGACCCGAATTAGATTTAAACGAATATTGGGGTCGTGGAAATGCGAAGAACTA
TAAAGAAGATAAAACGATTAAACCATTCAAAATTTCATATTCTGCTGAGGTAATAAAACG
TTTAACGGATAAACTCAGTGATGGGCAAGCTCAAGCCTTTACCGAGCCACTCGAAAATAC
AGCATTTGAATATGGATTTAATACGAAGCACTTACAAGTTGTATTAAATTATTGGAAAGA
CCAATATCTGCCGAAATGGAATGAACGTGAACAGTTTTTGAATCAGTTTCCGCAATTTAC
CACACAAATACAAGGCTTAAATATTCATTTTATTCATGCAAAACCAACAAAGACAAATGC
AAATACCAAAGTTTTTCCATTGATTTTACTTCATGGTTGGCCAGGATCAGTGCGTGAATT
CTATGACATTATTCCATTGCTAACAACTCCTTCAAAAGATAACATAGCGTTTGAAGTCAT
TGCCCCGTCATTACCTGGTTATGGTTGGAGTGAAGCTGCAAAAAAACAAGGATTGGGTGC
AGTTCGTATTGCTGTTATTTTTAGAAATCTCATGAAACGACTCGGAATTGAAAAATATTA
TATACAAGGTGGAGATTGGGGCTCACTCATTGGAATAAATATGGCAACACTCTTTCCTGA
GAATGTTTTAGGCTACCATACAAACATGTGCGGAATAAACACACCTATGGCTAACATCAA
AATGTTTATTGCATCGTTTTATCCTTCATACTTTATGGATGAGAAATACGTC

>g13392.t5 Gene=g13392 Length=286
MGALKNVFYSALALAIAFSYQTYRDLTKPFPRPELDLNEYWGRGNAKNYKEDKTIKPFKI
SYSAEVIKRLTDKLSDGQAQAFTEPLENTAFEYGFNTKHLQVVLNYWKDQYLPKWNEREQ
FLNQFPQFTTQIQGLNIHFIHAKPTKTNANTKVFPLILLHGWPGSVREFYDIIPLLTTPS
KDNIAFEVIAPSLPGYGWSEAAKKQGLGAVRIAVIFRNLMKRLGIEKYYIQGGDWGSLIG
INMATLFPENVLGYHTNMCGINTPMANIKMFIASFYPSYFMDEKYV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13392.t5 Gene3D G3DSA:3.40.50.1820 - 35 280 2.7E-79
2 g13392.t5 PANTHER PTHR21661:SF35 EPOXIDE HYDROLASE 11 283 5.0E-95
3 g13392.t5 PANTHER PTHR21661 EPOXIDE HYDROLASE 1-RELATED 11 283 5.0E-95
16 g13392.t5 PIRSF PIRSF001112 Epoxide_hydro 3 286 1.9E-93
7 g13392.t5 PRINTS PR00412 Epoxide hydrolase signature 160 178 1.6E-14
4 g13392.t5 PRINTS PR00412 Epoxide hydrolase signature 185 200 1.6E-14
6 g13392.t5 PRINTS PR00412 Epoxide hydrolase signature 230 243 1.6E-14
5 g13392.t5 PRINTS PR00412 Epoxide hydrolase signature 244 257 1.6E-14
1 g13392.t5 Pfam PF06441 Epoxide hydrolase N terminus 55 169 8.8E-29
12 g13392.t5 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
13 g13392.t5 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 6 -
14 g13392.t5 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 7 14 -
15 g13392.t5 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 19 -
11 g13392.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 286 -
8 g13392.t5 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 46 265 2.29E-60
9 g13392.t5 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0033961 cis-stilbene-oxide hydrolase activity MF
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values