Gene loci information

Transcript annotation

  • This transcript has been annotated as Juvenile hormone epoxide hydrolase 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13392 g13392.t6 isoform g13392.t6 29680633 29682127
chr_1 g13392 g13392.t6 exon g13392.t6.exon1 29680633 29680740
chr_1 g13392 g13392.t6 cds g13392.t6.CDS1 29680635 29680740
chr_1 g13392 g13392.t6 exon g13392.t6.exon2 29680895 29680983
chr_1 g13392 g13392.t6 cds g13392.t6.CDS2 29680895 29680983
chr_1 g13392 g13392.t6 exon g13392.t6.exon3 29681227 29681432
chr_1 g13392 g13392.t6 cds g13392.t6.CDS3 29681227 29681432
chr_1 g13392 g13392.t6 exon g13392.t6.exon4 29681507 29681799
chr_1 g13392 g13392.t6 cds g13392.t6.CDS4 29681507 29681799
chr_1 g13392 g13392.t6 exon g13392.t6.exon5 29682059 29682127
chr_1 g13392 g13392.t6 cds g13392.t6.CDS5 29682059 29682126
chr_1 g13392 g13392.t6 TSS g13392.t6 NA NA
chr_1 g13392 g13392.t6 TTS g13392.t6 NA NA

Sequences

>g13392.t6 Gene=g13392 Length=765
AGATGGGAGCACTGAAAAATGTTTTCTACAGTGCGTTGGCACTTGCAATCGCATTTTCTT
ATCAGACTTATAGAGATTTAACAAAGCCATTTCCAAGACCCGAATTAGATTTAAACGAAT
ATTGGGGTCGTGGAAATGCGAAGAACTATAAAGAAGATAAAACGATTAAACCATTCAAAA
TTTCATATTCTGCTGAGGTAATAAAACGTTTAACGGATAAACTCAGTGATGGGCAAGCTC
AAGCCTTTACCGAGCCACTCGAAAATACAGCATTTGAATATGGATTTAATACGAAGCACT
TACAAGTTGTATTAAATTATTGGAAAGACCAATATCTGCCGAAATGGAATGAACGTGAAC
AGTTTTTGAATCAGTTTCCGCAATTTACCACACAAATACAAGGCTTAAATATTCATTTTA
TTCATGCAAAACCAACAAAGACAAATGCAAATACCAAAGTTTTTCCATTGATTTTACTTC
ATGGTTGGCCAGGATCAGTGCGTGAATTCTATGACATTATTCCATTGCTAACAACTCCTT
CAAAAGATAACATAGCGTTTGAAGTCATTGCCCCGTCATTACCTGGTTATGGTTGGAGTG
AAGCTGCAAAAAAACAAGGATTGGGTGCAGTTCGTATTGCTGTTATTTTTAGAAATCTCA
TGAAACGACTCGGAATTGAAAAATATTATATACAAGGTGGAGATTGGGGCTCACTCATTG
GAATAAATATGGCAACACTCTTTCCTGAGAATGTTTTAGGTAAAT

>g13392.t6 Gene=g13392 Length=254
MGALKNVFYSALALAIAFSYQTYRDLTKPFPRPELDLNEYWGRGNAKNYKEDKTIKPFKI
SYSAEVIKRLTDKLSDGQAQAFTEPLENTAFEYGFNTKHLQVVLNYWKDQYLPKWNEREQ
FLNQFPQFTTQIQGLNIHFIHAKPTKTNANTKVFPLILLHGWPGSVREFYDIIPLLTTPS
KDNIAFEVIAPSLPGYGWSEAAKKQGLGAVRIAVIFRNLMKRLGIEKYYIQGGDWGSLIG
INMATLFPENVLGK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13392.t6 Gene3D G3DSA:3.40.50.1820 - 35 254 1.8E-75
2 g13392.t6 PANTHER PTHR21661:SF35 EPOXIDE HYDROLASE 11 253 3.7E-86
3 g13392.t6 PANTHER PTHR21661 EPOXIDE HYDROLASE 1-RELATED 11 253 3.7E-86
7 g13392.t6 PRINTS PR00412 Epoxide hydrolase signature 160 178 6.4E-14
4 g13392.t6 PRINTS PR00412 Epoxide hydrolase signature 185 200 6.4E-14
6 g13392.t6 PRINTS PR00412 Epoxide hydrolase signature 230 243 6.4E-14
5 g13392.t6 PRINTS PR00412 Epoxide hydrolase signature 244 254 6.4E-14
1 g13392.t6 Pfam PF06441 Epoxide hydrolase N terminus 55 169 6.7E-29
12 g13392.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
13 g13392.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 6 -
14 g13392.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 7 14 -
15 g13392.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 19 -
11 g13392.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 254 -
8 g13392.t6 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 46 253 1.99E-57
9 g13392.t6 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values