General information for g13411.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable phosphorylase b kinase regulatory subunit alpha.
Parent gene
- The parent gene g13411 is located on chr_1: 29900540..29902275 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13411 | g13411.t1 | TSS | g13411.t1 | 29892026 | 29892026 |
| chr_1 | g13411 | g13411.t1 | isoform | g13411.t1 | 29892253 | 29901094 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon1 | 29892253 | 29892381 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS1 | 29892253 | 29892381 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon2 | 29892549 | 29893074 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS2 | 29892549 | 29893074 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon3 | 29893143 | 29893678 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS3 | 29893143 | 29893678 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon4 | 29893736 | 29893855 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS4 | 29893736 | 29893855 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon5 | 29893928 | 29894185 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS5 | 29893928 | 29894185 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon6 | 29896613 | 29896760 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS6 | 29896613 | 29896760 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon7 | 29897759 | 29897923 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS7 | 29897759 | 29897923 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon8 | 29898098 | 29898265 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS8 | 29898098 | 29898265 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon9 | 29898486 | 29898506 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS9 | 29898486 | 29898506 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon10 | 29898558 | 29898851 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS10 | 29898558 | 29898851 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon11 | 29899700 | 29899926 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS11 | 29899700 | 29899926 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon12 | 29899984 | 29900541 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS12 | 29899984 | 29900541 |
| chr_1 | g13411 | g13411.t1 | exon | g13411.t1.exon13 | 29900606 | 29901094 |
| chr_1 | g13411 | g13411.t1 | cds | g13411.t1.CDS13 | 29900606 | 29901094 |
| chr_1 | g13411 | g13411.t1 | TTS | g13411.t1 | 29901843 | 29901843 |
Sequences
>g13411.t1 Gene=g13411 Length=3639
ATGCGATCACGATCAAATTCGGGTGTCCGGCTGGACTACTACCAGCGAATTGTACACCGT
TTAATAATGGCTCATCAACAGCCAGTCACAGGACTTTTTCCAGCAAGTCCTGCAAATCAT
CATGCTTGGATACGTGATAATGTCTACTGTATTTTGGCTGTTTGGGGTCTGTCAATGGCC
TATAAAAAAATTGCTGATCAAGATGAAGATCGCGCTAAAGCATACGAATTAGAGCAAAGC
TGCGTTAAATTAATGCGCGGTTTATTAATGGCAATGATGCGACAAAAGGAAAAAGTTGAA
CGTTTTAAAATAACTCAAAATCCACTCGATTCATTGCACGCAAAATATTCAAGCAAGAAC
GGTCAAGCAGTTGTTCGTGATGACGAATGGGGTCATTTGCAGATCGACGCAATTTCATTG
TATCTTTTGATACTTGCACAGATGACAGCCTCTGGCTTACAAATTGTCTTCTCTCTCGAT
GAAGTGTCGTTTATTCAAAATCTTGTGTTCTATATTGAGAGTGCTTATTGTATTCCTGAT
TATGGAATTTGGGAACGTGGTGATAAATCTAATCATGGTCAGCCAGAATTGAATGCAAGT
TCAATTGGCATGGCGAAAGCAGCTTTAGAAGCGATGAATGAGTTAGATTTGTTTGGCGCC
AGAGGTGGTCCAGCATCAGTCATTCACGTTTTAGCTGATGAAGCTCACAAGTGTCAAGCT
GTGTTGCAATCAATGCTGCCTCGTGAATCTAATAGTAAAGAATTGGATTCAGGTCTCTTA
TCAATCATCGGCTTTCCAGCATTCGCTGTTGATGATCCATCACTTATTGAAGAAACAAGA
GATGCCATCGTTACACGTCTTCAAGGTCGTTATGGATGCAAAAGATTCTTACGTGATGGA
TATAAGACACCACGTGAAGATTGCTCTAGATTATATTACGAACGTTGGGAATTGAGAATG
TTTGAAAATATTGAATGTGAATGGCCTCTTTTCTTTTGCTATCTCATATTGAATCATGCA
TTTCATGGCAATAAAGACGCAGTGTCAAACTACGTAGCAAAATTGGAAGATATCATGGTA
AAAACTGAAGAGGGCATGAAACTTGTGCCAGAATTATATACTGTACCGAATGACTCGGTA
AATGATGAATATAAAAACCCAGGCTCAAGTCAACGTTTGCCAATCGGAAGAACACCATTT
TTATGGGCTCAATCTCTTTACATTTTGGGTAAATTGTTGCAAGAGGGATTTTTGGCTGTT
GGTGAGCTTGATCCTCTTAATAGACGTTTGGGTGCTCAAAAGAAACCAGATGTGGTTGTA
CAAGTAGTTATTCTCGCAGATGATGATGAAATTCGAATGAAATTAGCCGATCATGGTTTT
CATGTGCAAACTGTTGCTGAAGTTGCTCCAATTGAAGTTCAACCCGCACGTGTATTGAGT
CATTTGTACACCTATTTAGGTCGTAACAAGAAATTAGGATTAACTGGCCGTAAATCGAGG
GATGTTGGTATACTTAGTACCAGTAAACTCTATTCATTAAAAGACAGGATTTTTGCATTC
ACACCGCAAAATATTGACTTTGACGAGTACTATACAACAAGAGATCCCGACCTTCTTGCA
AGCAATTTTACGAATAATTTGGCATTTTTGGCCCAAAGTTGGTCGCACACCTTGGGCAGA
CCTTTGCACGTGTTGACGTTTCACTCATTTCTGTTAGATCAAAATCGAATTCCATTGGCG
ATGATTCAAACAATGAAAAAATTGAAGTCAGGATATATTAATGGAACGCGTGTTATGTTG
GGAAATCTTGGAGATTTCTTAAATACATCAGCTGTTACAGATTTGAGCTTTTTAGGCAGT
CAAGAAGATGGATATCCAGACAAATTGAATCCGGCTGTTCAAGCATATTTGGATGAGCAT
TTGTTGAGATCGATATCACACAAGAACTCGCTAGCAGGAATGAGAGGAGGATCATTGCGT
CCGCGTAACTTGAGACGCCGCATGAGTGTAAAAGGAGCAATCAAAAAGACTCGCTCCATC
AACGTCGACTCCGAGACATTGGGAATGGAAGATTCTAGTGCTACCTCAACTGTCCCTCCG
CCCGCGGGCCCCGACAATCGTGAAATTACTCCAAGGCCAGAAATTTCTGAAGACGGCTTG
CCACCAAATAAAGTGCAAATCCAAACATCAGATGTGCCACGCATCAATATCTCACGTCAC
CATCGTGTCGGTCAATCAGAATCAAATTTTGAAAATACTGAAGTTGAAGAGCTCTTGGCT
ATGCTTCGAGAGACAGAAAATCTTGAAGAACAGGGTGACATTTTGCAATATTTGGTGGAT
ACACAAGGATTGGAATTTAATACAGAACTGGCTGCAAATGACGATCAATCGAATAATAAT
TCTAATTCTACAAATCAAGGAATGTTGGAGGGCGGTCGCGTTGTCACAGTGCGCGATTTG
CTCAAAGGTCTCTATGAAAAGGCCTGCCAGCAAAAACTATGGGGTCTCGTACGTCACACG
GCGGGTATGTTGGGCAAGAGAGTTGAGGACTTAGCAAAGGCAGTTACTGACTTATTAGTT
CGACAAAAACAGGTCACTGTTGGAATGCCTCCAACAAATGAGTTTACAATTACTGCACCA
CTACCAGAAGCAGAACTTCGTCAGTTAATTCATGAAGCATATGGCGATGATGAGAGTACA
GCTATGTTGACACAAGAATTATTAGTCTATCTCTCAATGTTTATTCGTACGGAACCACAA
CTATTTCATGAGATGCTTCGTCTTCGTGTTGGTTTAATCATTCAAGTTATGGCAAAGGAG
TTGTCGCGTACACTTGCATGTGATGGTGAACAAGCGTCGGAACATCTTCTTAATTTGTCA
CCTTTCGAAATGAAAAATCTTTTACATCATATTCTGAGCGGTAAAGAATTTGCCGTAAGC
AGTGTTGCAAGAGGAAATTTTTCAATCGTAAGCTGTAAATCAAGTCGTGTTAGTAAGAAA
AGTCAAATTGGATTGGGTGACATTGATGAAGATCCATCAACACTTATTGACGACCGTCAG
GGTCAATGGTTGAGACGTCGTCGTCTCGATGGTGCTTTAAATCGTGTTCCAAGAGATTTT
TATCCTCGTGTCTGGACTGTATTGGAAAGATGCCAAGGAATTGCAATTGAGGGACGTGTC
TTGCCACAAAGTCTAACACAAGAAATGACTTCGAACGAGCTTAAATTTGCATTGGAAGTA
GAGACGGCACTCAACACAATTCCGCAACCAGAGTATCGTCAATTGGTTGTTGAGGCGCTT
ATGGTGCTGACACTTGTCACTGAGCATAATGTTTCACATTCGCTTGGTGGAATTATTTAT
GTTGAACATTTGGTGCATAAAGCAAATCAACTCTTCTTAGAAGATCAACGTGCAGTATCA
GGAGATGCAACATTGTGCTGTGCAAAAGCAAAAGACGGCTCAAAGGAAACAACTGCAACT
GGTAATCTATTGTGCGGTGGTGCCGCTTATATTTGTCAGCATCTCTATGATAGTGCTCCT
AGTGGCTCATTTGGAACAATGACTTATATTGCCAAAGCAATTGCATGTGTCTTTGAATGT
CTACCGAAGAATGGTGATGTAGATTGTTCAATACAGTAA
>g13411.t1 Gene=g13411 Length=1212
MRSRSNSGVRLDYYQRIVHRLIMAHQQPVTGLFPASPANHHAWIRDNVYCILAVWGLSMA
YKKIADQDEDRAKAYELEQSCVKLMRGLLMAMMRQKEKVERFKITQNPLDSLHAKYSSKN
GQAVVRDDEWGHLQIDAISLYLLILAQMTASGLQIVFSLDEVSFIQNLVFYIESAYCIPD
YGIWERGDKSNHGQPELNASSIGMAKAALEAMNELDLFGARGGPASVIHVLADEAHKCQA
VLQSMLPRESNSKELDSGLLSIIGFPAFAVDDPSLIEETRDAIVTRLQGRYGCKRFLRDG
YKTPREDCSRLYYERWELRMFENIECEWPLFFCYLILNHAFHGNKDAVSNYVAKLEDIMV
KTEEGMKLVPELYTVPNDSVNDEYKNPGSSQRLPIGRTPFLWAQSLYILGKLLQEGFLAV
GELDPLNRRLGAQKKPDVVVQVVILADDDEIRMKLADHGFHVQTVAEVAPIEVQPARVLS
HLYTYLGRNKKLGLTGRKSRDVGILSTSKLYSLKDRIFAFTPQNIDFDEYYTTRDPDLLA
SNFTNNLAFLAQSWSHTLGRPLHVLTFHSFLLDQNRIPLAMIQTMKKLKSGYINGTRVML
GNLGDFLNTSAVTDLSFLGSQEDGYPDKLNPAVQAYLDEHLLRSISHKNSLAGMRGGSLR
PRNLRRRMSVKGAIKKTRSINVDSETLGMEDSSATSTVPPPAGPDNREITPRPEISEDGL
PPNKVQIQTSDVPRINISRHHRVGQSESNFENTEVEELLAMLRETENLEEQGDILQYLVD
TQGLEFNTELAANDDQSNNNSNSTNQGMLEGGRVVTVRDLLKGLYEKACQQKLWGLVRHT
AGMLGKRVEDLAKAVTDLLVRQKQVTVGMPPTNEFTITAPLPEAELRQLIHEAYGDDEST
AMLTQELLVYLSMFIRTEPQLFHEMLRLRVGLIIQVMAKELSRTLACDGEQASEHLLNLS
PFEMKNLLHHILSGKEFAVSSVARGNFSIVSCKSSRVSKKSQIGLGDIDEDPSTLIDDRQ
GQWLRRRRLDGALNRVPRDFYPRVWTVLERCQGIAIEGRVLPQSLTQEMTSNELKFALEV
ETALNTIPQPEYRQLVVEALMVLTLVTEHNVSHSLGGIIYVEHLVHKANQLFLEDQRAVS
GDATLCCAKAKDGSKETTATGNLLCGGAAYICQHLYDSAPSGSFGTMTYIAKAIACVFEC
LPKNGDVDCSIQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g13411.t1 | Gene3D | G3DSA:1.50.10.10 | - | 17 | 413 | 9.0E-16 |
| 5 | g13411.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 700 | - |
| 6 | g13411.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 719 | - |
| 7 | g13411.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 790 | 809 | - |
| 2 | g13411.t1 | PANTHER | PTHR10749 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT | 1 | 1201 | 0.0 |
| 3 | g13411.t1 | PANTHER | PTHR10749:SF7 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT ALPHA-RELATED | 1 | 1201 | 0.0 |
| 1 | g13411.t1 | Pfam | PF00723 | Glycosyl hydrolases family 15 | 8 | 932 | 1.3E-177 |
| 4 | g13411.t1 | SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 11 | 448 | 3.95E-83 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005977 | glycogen metabolic process | BP |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005516 | calmodulin binding | MF |
KEGG
Orthology
- This transcript has been annotated with K07190 (phosphorylase kinase alpha/beta subunit)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
