Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable phosphorylase b kinase regulatory subunit alpha.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13411 g13411.t3 isoform g13411.t3 29900540 29902275
chr_1 g13411 g13411.t3 exon g13411.t3.exon1 29900540 29900541
chr_1 g13411 g13411.t3 exon g13411.t3.exon2 29900606 29902275
chr_1 g13411 g13411.t3 cds g13411.t3.CDS1 29900660 29901094
chr_1 g13411 g13411.t3 TTS g13411.t3 29902275 29902275
chr_1 g13411 g13411.t3 TSS g13411.t3 NA NA

Sequences

>g13411.t3 Gene=g13411 Length=1672
GATGCCAAGGAATTGCAATTGAGGGACGTGTCTTGCCACAAAGTCTAACACAAGAAATGA
CTTCGAACGAGCTTAAATTTGCATTGGAAGTAGAGACGGCACTCAACACAATTCCGCAAC
CAGAGTATCGTCAATTGGTTGTTGAGGCGCTTATGGTGCTGACACTTGTCACTGAGCATA
ATGTTTCACATTCGCTTGGTGGAATTATTTATGTTGAACATTTGGTGCATAAAGCAAATC
AACTCTTCTTAGAAGATCAACGTGCAGTATCAGGAGATGCAACATTGTGCTGTGCAAAAG
CAAAAGACGGCTCAAAGGAAACAACTGCAACTGGTAATCTATTGTGCGGTGGTGCCGCTT
ATATTTGTCAGCATCTCTATGATAGTGCTCCTAGTGGCTCATTTGGAACAATGACTTATA
TTGCCAAAGCAATTGCATGTGTCTTTGAATGTCTACCGAAGAATGGTGATGTAGATTGTT
CAATACAGTAAATTTATTTCATTTTGTTTCTATCTAGACAAGCTTTTTTATTATTTACGT
ATTTTTTTTCTAATTCTTGCCATTTTAAATGAAACTAAAAATAATTTCAAGTTATTCTAT
ACATATAGTTAGGATTTTTACACTAATTATGATGATATTAAACACAACTTTGAATGAGAA
TAATTATTGACATAAGAAAGAAAAAGAATTTTATTAGATAGATTTATGATTTATATTGTG
GTCAAAAAACGACTTTAAAAAATTATTTTATGTGTATAAGAATGGTTTTATTTTTAAAAA
AATATTAACTTCTACTTAGAAAGACACATATATGCAATACAGAAACTTTTAAGTTTTAAA
AAATATAATTTTGAAAGATTTTTTTAAACAATAGACATCACACAATGTGGATGCATGATA
ATTTTAATTTTTAACCTTTGATTATCACATTTAATTATTTTGTGTGTAAATTGCGTTAGA
ATAAAAATTTGAGGTGAAAATGCAGCTAAAATTTCACAGCCAACAAACAGAAAGATATTT
ATTCGCAAATAAATCACCGGCACAAAACAGAGATAAAAAATAGCTGCATGATTCAAATGA
CCTTCATAAAACCTTCTCTTGCATAGTCATACACGTGAAAAATAAATTTGAAAAAGTAAG
TGTCATGAGTCAAAATAAATTGAAGAAAGCCATATAATAAATTGACTTCTTATGAAAGCA
TGACAGCATGAAAATAAATTTTAAATTAGATTTAAAAAAGAATAAGTGTTTGCAATCAAA
GCATAATCATAGAATTATCATTATTTTGATGACATTTTAATTAACATGAAAAATGAAAGC
AACAATATGAAAATTTCTATATCACATCTATGAAAAATGAAAAAGAAAAAAAAATTTCTA
AATACATAGTTGAATTTTTTCTCTTGGTTATAAGTGTTGATAATAGAAAAAAGTAAAAAT
ATTGAAATCCTATTAAAAAATGACAAATCATAGTAAAAGAGCAAATTTATCCAACGATTA
TTATTAATTTAGATAAATTCATTATGAGATAACTTAGCGTTATCTATTTCATAGCACACA
ATCACAATTTTCTTTTTACATACATACATAAAAATGGTGTTACTTTTAACTTATTGCTTT
ACAACATGAAATAAAATGAAAAATAAACAATTGAATCATTATAATATTGGAA

>g13411.t3 Gene=g13411 Length=144
MTSNELKFALEVETALNTIPQPEYRQLVVEALMVLTLVTEHNVSHSLGGIIYVEHLVHKA
NQLFLEDQRAVSGDATLCCAKAKDGSKETTATGNLLCGGAAYICQHLYDSAPSGSFGTMT
YIAKAIACVFECLPKNGDVDCSIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g13411.t3 PANTHER PTHR10749 PHOSPHORYLASE B KINASE REGULATORY SUBUNIT 1 133 0
g13411.t3 PANTHER PTHR10749:SF7 PHOSPHORYLASE B KINASE REGULATORY SUBUNIT ALPHA-RELATED 1 133 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005977 glycogen metabolic process BP
GO:0005516 calmodulin binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values