General information for g13413.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13413 is located on chr_1: 29912956..29914710 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13413 | g13413.t11 | isoform | g13413.t11 | 29912956 | 29914305 |
| chr_1 | g13413 | g13413.t11 | exon | g13413.t11.exon1 | 29912956 | 29913194 |
| chr_1 | g13413 | g13413.t11 | exon | g13413.t11.exon2 | 29913349 | 29913621 |
| chr_1 | g13413 | g13413.t11 | cds | g13413.t11.CDS1 | 29913518 | 29913621 |
| chr_1 | g13413 | g13413.t11 | exon | g13413.t11.exon3 | 29913681 | 29913773 |
| chr_1 | g13413 | g13413.t11 | cds | g13413.t11.CDS2 | 29913681 | 29913773 |
| chr_1 | g13413 | g13413.t11 | exon | g13413.t11.exon4 | 29913826 | 29914046 |
| chr_1 | g13413 | g13413.t11 | cds | g13413.t11.CDS3 | 29913826 | 29913934 |
| chr_1 | g13413 | g13413.t11 | exon | g13413.t11.exon5 | 29914157 | 29914305 |
| chr_1 | g13413 | g13413.t11 | TSS | g13413.t11 | NA | NA |
| chr_1 | g13413 | g13413.t11 | TTS | g13413.t11 | NA | NA |
Sequences
>g13413.t11 Gene=g13413 Length=975
AAATTTATTTTAGAAAATACATTTTCTTAAATACTTTTTATAATATTTGCTAATTTTCAG
ACTTAGCAAACTCATGTTCCCTTAGTATTCTGTCTCTGAAGAGTTTTTGTTGCATTTTGA
GTGGCATTAAGTTGACATATTTTGTAACAAACTCAAAATACCATGGAATTGACAAAATTC
TCACTTCTTTTTGTATTGCATCAACAATCTTTGAAGCAACAAAATTCACTTCTAATGGCT
TTTTAAACTTACTTTGGATTCAAGAAATTTGTGACAGTTTCATTAGTTTTAATGAAAAAT
GGAAATACACAAGTTGTTTTTATTTTATCACCAAGTTTCTGAAGTCTTAAGAATTCAGTC
AATGCTGCCATGTAACCACTAACACCAAATTTTGTTGCTGTGTATTGAATGATTTGTGGA
GAAGGATGCAATCCTGCCATTGAAGAAATTGAGACAATATGTCCAGTCTTGCGAATCATC
ATTTGTTCGAGAAAATATTTTGTCATCTATTATAATGGGCCAATTAAATTAACATTTACT
AAACGTTCAATTTTCTTTGGATCTTCTTCTAAGCTTGTCACAGAAACAATCCCAGCATTA
TTAATCAAAATGTCAACAGCTCCAAGTGTTGAAGTTAATTCATCACGAAGTTTTACGATT
TCTTCTGCATTTGAGACATCAACTTTGTATGCTTTAGCTAAAGCACCAATTTGAGTCACT
TCTTTAGCTGTCTGATCAGCTGCATCTTTATCAATATCAATCACAGCGATATTGCAACCA
ACTGTAGCTAATTTTAAACAAATAGCTTTGCCTAATCCATTACCACTCACTCACCAATGC
CAATTTTCCTTTTATACATTTCTTTCGACTAAGAAAGATTTTGCAAAAAGCCCATTGAAG
ATACATTGGAAAGAATAATAATGCAGCGATAATGAAATCATAAATGAAGAGTAAAATTCT
TTTAAAATTTTCCAT
>g13413.t11 Gene=g13413 Length=101
MICGEGCNPAIEEIETICPVLRIIICSRKYFVIYYNGPIKLTFTKRSIFFGSSSKLVTET
IPALLIKMSTAPSVEVNSSRSFTISSAFETSTLYALAKAPI
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed