Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13420 g13420.t3 isoform g13420.t3 29970259 29970754
chr_1 g13420 g13420.t3 exon g13420.t3.exon1 29970259 29970371
chr_1 g13420 g13420.t3 cds g13420.t3.CDS1 29970259 29970371
chr_1 g13420 g13420.t3 exon g13420.t3.exon2 29970437 29970594
chr_1 g13420 g13420.t3 cds g13420.t3.CDS2 29970437 29970594
chr_1 g13420 g13420.t3 exon g13420.t3.exon3 29970643 29970754
chr_1 g13420 g13420.t3 cds g13420.t3.CDS3 29970643 29970704
chr_1 g13420 g13420.t3 TSS g13420.t3 NA NA
chr_1 g13420 g13420.t3 TTS g13420.t3 NA NA

Sequences

>g13420.t3 Gene=g13420 Length=383
TAGCAGTAGCCACTAGTCGTGGAAGTGATGTTGAGTTATTCGGAAATGAGATGGAAATGT
CAATGAAACAGCGAAATCAAGCAAATGCTCGTGAACGCTATAGAACTCACAGAAGAAAAT
TCAAAATTCTTACACATAGTGTCAACTCAGCATTCAACACATTGCGATTACTGATTCCAA
CTGAACCGAAAATCGAAAATTGTCAAAAATCGAAACTTTACGCTTGGCAAAATCTTACAT
TTCTCATTCTCAATGCAACTCTTTCCATTGGAAATTCCACTTGTCGACAACCATGCTTTG
AAGTGAGCAGTAATAAAACTTTTCAACATGATTATCGATCAAAATCTGTACATATTTGTG
TTTCATCAGTCATATCATCATAA

>g13420.t3 Gene=g13420 Length=110
MEMSMKQRNQANARERYRTHRRKFKILTHSVNSAFNTLRLLIPTEPKIENCQKSKLYAWQ
NLTFLILNATLSIGNSTCRQPCFEVSSNKTFQHDYRSKSVHICVSSVISS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g13420.t3 Gene3D G3DSA:4.10.280.10 HLH 3 58 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046983 protein dimerization activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed