General information for g13432.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as AMP deaminase 2.
Parent gene
- The parent gene g13432 is located on chr_1: 30020568..30021506 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13432 | g13432.t1 | isoform | g13432.t1 | 30018069 | 30020568 |
| chr_1 | g13432 | g13432.t1 | exon | g13432.t1.exon1 | 30018069 | 30018372 |
| chr_1 | g13432 | g13432.t1 | cds | g13432.t1.CDS1 | 30018069 | 30018372 |
| chr_1 | g13432 | g13432.t1 | exon | g13432.t1.exon2 | 30018740 | 30019275 |
| chr_1 | g13432 | g13432.t1 | cds | g13432.t1.CDS2 | 30018740 | 30019275 |
| chr_1 | g13432 | g13432.t1 | exon | g13432.t1.exon3 | 30019417 | 30020568 |
| chr_1 | g13432 | g13432.t1 | cds | g13432.t1.CDS3 | 30019417 | 30020568 |
| chr_1 | g13432 | g13432.t1 | TTS | g13432.t1 | 30021499 | 30021499 |
| chr_1 | g13432 | g13432.t1 | TSS | g13432.t1 | NA | NA |
Sequences
>g13432.t1 Gene=g13432 Length=1992
ATGGAAATCGATCGTCATTCAATTGCACCAGAAGTTCATCAAGCGGATGATGCTCTATCA
ATTGATGAGCATGATTTTGTGCCGCACTTTCAACGTGTTTCAATCTCAGGCGAAGACACG
AGTGGTGTGCCATTAGAAGATCTTGAAAGAGCATCGCGTTTGTTGATTCAAGCTTTAGAA
ATTCGTGAACGTTATATGACAATTTCTCATCAATCATTTCCTCAAACAACTGGTCGTTTT
GTAAGAACACGTCAAGAAAAAGATGCCAATGTTGTACATCATGATGATAAGAAAACAATT
GCTGAACATCCAGTCAATGCACCGCCACACGACTCACCTTGGGATGTGGAATTCCTCGAA
GATCTCGATTGTACACTCAAGGCTGAAAATGGAATTTATCAAGTTTATCGTGATGCTGAA
TGCAAGGATATTTATGACTATCCATGTCCGAAATTGTCAGAATTTATTCAAGATATGCAA
ACAATGTGCACAATGATTGCTGATGGACCATTAAAGTCTTTCTGTTATCGACGTCTGAGT
TATTTGTATTCGAAATTTCAACTGCATGTGCTGCTCAATGAACTTCGTGAATTGGCCTCA
CAAAAAGCTGTTCCTCATCGTGATTTTTACAATATTAGAAAAGTTGACACTCACATTCAT
GCAGCATCATGTATGAACCAAAAACATCTTTTGCGTTTTATCAAGAAAACATTGAAAAAT
AATGCTGATGAAGTTGTGACTGTTACAAAATCTGGTCAAAAAATGACTCTCTCAGAAGTG
TTCAAGTCTATGAATCTCACAACTTATGATCTTACTGTGGATATGCTTGATGTTCATGCT
GATCGAAACACATTTCATCGTTTTGACAAGTTCAATGCTAAATATAATCCAATCGGCGAG
TCGCGACTTCGTGAAGTTTTTCTTAAAACTGACAATTATTTAAATGGCAAATATTTTGCA
CACATAATTAAAGAAGTTGCATCTGATTTTGAAGAATCAAAATATCAAAATGCTGAGCTT
CGTTTGTCAATTTATGGAAAATCAAGAGATGAATGGGAAAAATTAGCCAAATGGGGACTT
GATCATAATGTCTATTCTGATAATATTCGTTGGCTAATTCAAGTGCCACGATTGTATGAT
ATTTTCAAGACTAACAAAATTGTCAAATCGTTCCAAGAAATTATTGACAATATTTTCTTG
CCACTTTTTGAAGCGACTGCTTATCCTAACAAACATCCAGAACTGCACAAGTTCTTGCAA
TATGTAATTGGCTTAGATTCAGTTGATGATGAGAGCAAGCCTGAAAATCCTTTAATTGAT
ACTGAAATGCCAACACCAGCTCAATGGACTGATGATGAAAATCCACCTTATGCATATTAT
CTCTTTTATATGTATTCTAATCTCACTGTATTGAACAACTTCCGTCGTGAACGTGGATTG
AATACATTTGTCTTAAGACCTCATTGTGGTGAAGCTGGTGCAGTTCAGCATTTGGTTTGT
GGATATTTAATGGCTGAAAATATTTCTCATGGTTTGTTATTAAGAAAAGTTCCAGTTCTT
CAATATCTTTTCTATCTCGCTCAAATTGGAATTGCCATGAGTCCGCTCAGCAACAATTCA
CTCTTCTTAAATTATCATCGTAATCCATTGCCTGAATATTTAGCTCGTGGATTAATTGTA
TCACTTTCAACTGATGATCCTTTGCAATTTCATTTCACTAAAGAACCTCTTATGGAAGAA
TATTCAATTGCTGCACAAGTATGGAAATTATCTAGCTGTGACATGTGTGAATTGGCTCGC
AATAGTGTCATTATGTCTGGATTTTCACATAAAGTTAAACAACATTGGCTTGGACCCAAT
TACACTCGTGAAGGAGTCGCTGGCAATGACATAACACGCACAAATGTGCCAGACATTAGA
GTCGCTTTTCGTTATGAGACATTGTTAGATGAATTGTCAAATATTTTCAAAGTTGGCGCA
GAAATGTCCTAG
>g13432.t1 Gene=g13432 Length=663
MEIDRHSIAPEVHQADDALSIDEHDFVPHFQRVSISGEDTSGVPLEDLERASRLLIQALE
IRERYMTISHQSFPQTTGRFVRTRQEKDANVVHHDDKKTIAEHPVNAPPHDSPWDVEFLE
DLDCTLKAENGIYQVYRDAECKDIYDYPCPKLSEFIQDMQTMCTMIADGPLKSFCYRRLS
YLYSKFQLHVLLNELRELASQKAVPHRDFYNIRKVDTHIHAASCMNQKHLLRFIKKTLKN
NADEVVTVTKSGQKMTLSEVFKSMNLTTYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGE
SRLREVFLKTDNYLNGKYFAHIIKEVASDFEESKYQNAELRLSIYGKSRDEWEKLAKWGL
DHNVYSDNIRWLIQVPRLYDIFKTNKIVKSFQEIIDNIFLPLFEATAYPNKHPELHKFLQ
YVIGLDSVDDESKPENPLIDTEMPTPAQWTDDENPPYAYYLFYMYSNLTVLNNFRRERGL
NTFVLRPHCGEAGAVQHLVCGYLMAENISHGLLLRKVPVLQYLFYLAQIGIAMSPLSNNS
LFLNYHRNPLPEYLARGLIVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELAR
NSVIMSGFSHKVKQHWLGPNYTREGVAGNDITRTNVPDIRVAFRYETLLDELSNIFKVGA
EMS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g13432.t1 | CDD | cd01319 | AMPD | 155 | 652 | 0.0 |
| 6 | g13432.t1 | Gene3D | G3DSA:3.20.20.140 | - | 126 | 651 | 4.0E-270 |
| 5 | g13432.t1 | Gene3D | G3DSA:2.30.30.800 | - | 225 | 316 | 4.0E-270 |
| 2 | g13432.t1 | PANTHER | PTHR11359:SF3 | AMP DEAMINASE 2 | 26 | 655 | 0.0 |
| 3 | g13432.t1 | PANTHER | PTHR11359 | AMP DEAMINASE | 26 | 655 | 0.0 |
| 7 | g13432.t1 | PIRSF | PIRSF001251 | AMP_deaminase | 2 | 663 | 0.0 |
| 1 | g13432.t1 | Pfam | PF00962 | Adenosine/AMP deaminase | 211 | 618 | 9.3E-122 |
| 9 | g13432.t1 | ProSitePatterns | PS00485 | Adenosine and AMP deaminase signature. | 561 | 567 | - |
| 4 | g13432.t1 | SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | 22 | 654 | 3.67E-191 |
| 10 | g13432.t1 | TIGRFAM | TIGR01429 | AMP_deaminase: AMP deaminase | 46 | 655 | 1.2E-295 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019239 | deaminase activity | MF |
| GO:0032264 | IMP salvage | BP |
| GO:0003876 | AMP deaminase activity | MF |
| GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K01490 (AMP deaminase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
