Gene loci information

Transcript annotation

  • This transcript has been annotated as Telomerase-binding protein EST1A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13440 g13440.t1 TTS g13440.t1 30139566 30139566
chr_1 g13440 g13440.t1 isoform g13440.t1 30140459 30163330
chr_1 g13440 g13440.t1 exon g13440.t1.exon1 30140459 30140604
chr_1 g13440 g13440.t1 cds g13440.t1.CDS1 30140459 30140604
chr_1 g13440 g13440.t1 exon g13440.t1.exon2 30140707 30140849
chr_1 g13440 g13440.t1 cds g13440.t1.CDS2 30140707 30140849
chr_1 g13440 g13440.t1 exon g13440.t1.exon3 30140970 30141213
chr_1 g13440 g13440.t1 cds g13440.t1.CDS3 30140970 30141213
chr_1 g13440 g13440.t1 exon g13440.t1.exon4 30143233 30143389
chr_1 g13440 g13440.t1 cds g13440.t1.CDS4 30143233 30143389
chr_1 g13440 g13440.t1 exon g13440.t1.exon5 30152989 30153423
chr_1 g13440 g13440.t1 cds g13440.t1.CDS5 30152989 30153423
chr_1 g13440 g13440.t1 exon g13440.t1.exon6 30153503 30153618
chr_1 g13440 g13440.t1 cds g13440.t1.CDS6 30153503 30153618
chr_1 g13440 g13440.t1 exon g13440.t1.exon7 30154937 30155043
chr_1 g13440 g13440.t1 cds g13440.t1.CDS7 30154937 30155043
chr_1 g13440 g13440.t1 exon g13440.t1.exon8 30155116 30155192
chr_1 g13440 g13440.t1 cds g13440.t1.CDS8 30155116 30155192
chr_1 g13440 g13440.t1 exon g13440.t1.exon9 30157314 30157392
chr_1 g13440 g13440.t1 cds g13440.t1.CDS9 30157314 30157392
chr_1 g13440 g13440.t1 exon g13440.t1.exon10 30157466 30157664
chr_1 g13440 g13440.t1 cds g13440.t1.CDS10 30157466 30157664
chr_1 g13440 g13440.t1 exon g13440.t1.exon11 30159979 30160139
chr_1 g13440 g13440.t1 cds g13440.t1.CDS11 30159979 30160139
chr_1 g13440 g13440.t1 exon g13440.t1.exon12 30160196 30160476
chr_1 g13440 g13440.t1 cds g13440.t1.CDS12 30160196 30160476
chr_1 g13440 g13440.t1 exon g13440.t1.exon13 30160721 30160831
chr_1 g13440 g13440.t1 cds g13440.t1.CDS13 30160721 30160831
chr_1 g13440 g13440.t1 exon g13440.t1.exon14 30160886 30162143
chr_1 g13440 g13440.t1 cds g13440.t1.CDS14 30160886 30162143
chr_1 g13440 g13440.t1 exon g13440.t1.exon15 30162311 30163182
chr_1 g13440 g13440.t1 cds g13440.t1.CDS15 30162311 30163182
chr_1 g13440 g13440.t1 exon g13440.t1.exon16 30163241 30163330
chr_1 g13440 g13440.t1 cds g13440.t1.CDS16 30163241 30163330
chr_1 g13440 g13440.t1 TSS g13440.t1 30163641 30163641

Sequences

>g13440.t1 Gene=g13440 Length=4476
ATGGATAATTATGGCTCGCGAGGAGGAAACAGTAATAAGTATACTTTAAACAAGAATCAA
AAATCAACCTACAACAACAGAAGACCTGTACATGATGATGAAATGTATTCAGAACGAGAT
CGAGGAGGTGATGACTATTATGGCCGAAAACCCAAGAAACCGGAACAAAATTTTTATCAT
CAACAAAAGCAACAACAACAACAACATTCTGATTCATCCTCATCAAAACGTTTTGAAACA
CGTCCACCATCGGAACCTAGAATTTTATCTAATAACATCAATAATAACAATTTTGCACCA
AATCAAATAGATGCAGATAGAAGTCGTGGTGATCAGAGAGGTGGTAATAAACCGCCTTCT
GTACCTCGAATCAATGCCAATGCTGCAGCTTTTCGAAACCTTCCAATGAATATTGACACT
TTGCCACCTAGATTAAAGAGAAAGTGTCTTAAAGATGCTGGTTTACCTGAGGAGCTTGCT
GAAAAGTCATTAAGTGAATTTGTGCAACAATCATCACCATACCCAACTTCAAACACACTG
CCTTATCGTAATCGTTATGATCAACGATACGAACAGCAGCAACAATATCATCAACAAAAT
AATAACAATTATCAATCAAAATATAATCAAAATCAAACTTATCATCATCATCACCATAAT
AATAATGAAAGAGGAAACAGTCACCATCGCTCGCGATCTATTACTCCACCACCGCCTAGA
CAGCAAGTTCAACATCAAAAACATACACCGAAGAATGAATGGAAATCACCAAATGATAAA
CAACATGACGATCTAATGCGTAATAAAGTGGATAGCAAAGACGGAAGTAGTTTTGATTGG
AGCGAGGATGTTCTACAAAATTCACAATCTCTTCCCTACGACGTCAATCAATCTCAATTA
AGTGGACACAAATATGAAGACAATAATCGACATAGACATCGAAATAGACGACGTAATCGA
AGTGCATCTAGTAACGGCAGTGTAGAACGATCTAGTGGCGGTGGCTATAATCCAAATGAT
AATAATTTTCAAAATGCTTTTAAAATGCCTTTTCCAAAATCTGGAAATAATAATCGACAA
CGCAGGAATAGTCAATCCTCATATAATAGTAGAGAAAATAGTATGGAACGTTCTTATGGT
TATAATAGCCGTGAAAATAGTCTTGATCGTAGACAAAATCGTGGTAGACGATATCAGAAT
CGAAGAGGAAGTGATAATTATCATTCAAGTCGTGAAAATAGCACAGAACGCTTTGGTAGC
AACTGGTCTCGTCATGGATCTTCAAACAACTTGCAACAAGATGATAATTTATCGTGGCGA
AAGACTGACATTGATGGTCCTCAAATGAGCAGCAGAACAGATCAGAAAATTGCAGAATTA
ACAAAGCAATTTGAACATTCAGTCGAACTGAATAGAAATAATAATGCAACCGAACATAAA
TTACTATTTGATCCAAAAAATCCTGAAAAGCCAATTTTAGTAACTCAATCACAAAGTCGT
ACTCGCGAATTTTTAGTGCCTGATCTAAATGAACACTTTAACATTAATGATCATCAACAT
TATTTCAGCTCTGCAAAACCTTCATGGTTTAAAAATTCATCGGAACAATATCAGAAACAG
ATAAAAAGCAAGAGCGCTATAGACGAACTTAATAGACTCGATGATGAACTATCACGAATA
ATTGACAGTGGAGAATTGATTGAACAATGGAATCAAATTTATGAATTACGTGAAAAAATT
CAAAAAATTTTCGAAGTACTCTTACGAAATGATATGAGATTTTGTCAAATTGAACATGTT
GAACATTATTTTTGGAAACTACTCTTTTATAAAATCATTGAAGTCCTGCGTAATAAAATG
CAAGATGCTAATGAAATAGAACGAAATATTTTCAAAGAAAAAGCACTTGAAATAGTTGAC
ACTGGAACAAGATATCTCGAATCGCTTTTAACGCACATAGAAATTTGTCACAAGTTTGAA
ATTCAAGACTACATTGGAGATAATGCTGCAAGTTATCGCAGTGGTCTCGGCTATATTGGT
TTAGCTCTAGTTTCAGCTCAAAAAATATTTCTCTTTCTTGGAGATTTGGCACGTTATCGT
GAGCAAATTAATCAAACAAACAATTTTGGACGAGCTAAAAATTATTATGTCAAAGCTCAA
CAAATTGTACCTAAAAATGGACGACCTTTTAATCAACTTGCACTGTTGGCTGTTTATTCC
AAAAGAAAAATTGATGCTGTGTATTTTTACATGAGAAGTCTGATGTCATCAAATCCCTTT
TTGTCTGCAAAAGAAAGTCTAGTTGCGTTATTTGATGAAATTCGAAAAAAGTATGAGTTT
AGTCAACGGAAGCGTGAAGAGAAAAATCGTCTGCGATTGAAAGAGAAAGAGCATCATCAT
TTCGATGGTAATCTAAGAAAAGAAACTTGGGTGCATCCAGAAGGCGGAGTTCGAGTTCAC
AGAACAGCACCGTTAGATTTATCCATGCTAGGTAAACGTCATGATAGCAGTGATGACGAT
GAAGAGTTAGAACAACTCGATCCATCTGAACTTAATAAACGATTTATAATATCGTTTTTG
CATGTGCAAGGAAAACTCATAACAAAAATTGGTATGGAGTCGTTTCAAAGTTGTGCAATT
CAAATGCTTAAAGAATTCAAAGCGCTACTTCATATATCACCAATACCCATAAACTCTCAC
CGCTTATTACAATTAATTTCACTCAACATATATGCCATTGATTGTAATGTAACCAATTCC
ACTGAACTGAAAGACTTGACGAGTGGATCAGACATTCAAGTTCGTTCAGAAATGCAAGAA
TGTGCGATAATTGTAGCTCTACTTATGTTTGGCATTATTGTCGATCGTTTTATTGAAGTG
TTAAAGGAGACACTCAATGGTGATAGTGGAAACAAATCAAACGATGTTTCTGTTGTGAAG
CTTGGCGTAGATGATCACAAAAATATGGATAAGAGTGCTACAATCAAGGACGAGTCAAAA
AAGATTTTGAAACTTAATGAAGATTCTAAAGTTATGTTGCCAGCTATCAAAGTTTTTACC
GATTGGATGTTCTATCACGAAAACATTTGGAATCCACCGCCGTTTCCATTTCCCGATTAT
AAAATTGGTGCTACGAGCAATCACGATTTGTGGACTGGACTCGCAATATTAATGACGCTA
CTCGAGACTGTTGTTGATGCAAACAAAGATTATTTGGTGCTTGAGAAGGAAGAAGATTGT
ACTTTAGTTCGTCTTTTGGAAGATATTACTATGGCTGGTTTCACACCATTAAAGAAAGTT
ACTCAAGATCCAATTTATTGTCGAAGTGATATTAATATAGAAATTGCTCAGAATTCACTG
AGATTACAAAAAATAAAATTTTTTGGAACTGATTTCCTGTGCAAATGTAATCCACAGCCA
ATATTAAAGAAGATTATCTCGTCAAATGGACGAATTGAGTATATAAGTGTCGTGCAAAAC
CGAACGGGAAGTGCAACTGATTCTGAAATTCTTATTGAAAGTTTCAGTGATGAAGAAGAG
AATGATAATAAAAAAATTGAAGATGGAGATATTAATAATGAACAAGAAAAAAATAAATCA
AATGTTAAAATCAGCAATAATGACAATGAGGAAGGAGATAAGGATGAAATCGGAAAAGAT
AAAGAAACAACAGTTGACCTCAAGAAAAACCATAACGATGCAGCTGAAATAAGAAGACTT
TTACGTCGAAAAGATGAATTAGAACGAAAGCATAAAATGCAGGAGAAGTACAATGAGCGG
CTTCAGGATATTTTGGCTAAAAGTATGGTTGCATTGCATATTGAAGTGAGACCACGTTAC
CTCATTCCTGATACAAATTGCTTCATTGATGATTTGAATTTGATTAAGTCAATCGCAAAT
GCTTATGATTCATTACATTATCAGCTGATGATTCCAATCACTGTTATCGCAGAGCTTGAA
GGATTGGGTCGCGGAAATGCAAAGTCATTGACATCATCGTCTTCATCAACATCAATGCCA
GTATCTTCTTCAGTTATGGCACCAGCATTATGTGAAAAATTAGAAAAAATTTCAATGCAT
AAAAACATCAAATCGGGAAGTCGCAACGATCCACAGCATGTAGCAATGGTAACGCAAGCG
TGCAAAAATGCTCTAGCGTTCTTAAATTCAAAACATCCCGCAGTGAAATGCGTGACGACA
AAGGGATCGATCATTAATGCAACAATATTTACGAGTGAAGACGGGCCCGCAAATGAGCAA
AAATCAAATGACGATAAAATTCTCGATACGGCGTTGAGTTTGTGCAAAAAGAATGTCGAC
GAGAAACGAGGTGATGTGAGGTATATTGTGCGAGAAGTAGTTCTTCTCACAAATGATCGC
AACTTGCGTGTTAAAGCATTGACAAATGATATTCCAGTACGTGAATTGCCCGATTTTATT
CGTTGGGCAGGACTTGGCAGTGATCATGATCTTTAA

>g13440.t1 Gene=g13440 Length=1491
MDNYGSRGGNSNKYTLNKNQKSTYNNRRPVHDDEMYSERDRGGDDYYGRKPKKPEQNFYH
QQKQQQQQHSDSSSSKRFETRPPSEPRILSNNINNNNFAPNQIDADRSRGDQRGGNKPPS
VPRINANAAAFRNLPMNIDTLPPRLKRKCLKDAGLPEELAEKSLSEFVQQSSPYPTSNTL
PYRNRYDQRYEQQQQYHQQNNNNYQSKYNQNQTYHHHHHNNNERGNSHHRSRSITPPPPR
QQVQHQKHTPKNEWKSPNDKQHDDLMRNKVDSKDGSSFDWSEDVLQNSQSLPYDVNQSQL
SGHKYEDNNRHRHRNRRRNRSASSNGSVERSSGGGYNPNDNNFQNAFKMPFPKSGNNNRQ
RRNSQSSYNSRENSMERSYGYNSRENSLDRRQNRGRRYQNRRGSDNYHSSRENSTERFGS
NWSRHGSSNNLQQDDNLSWRKTDIDGPQMSSRTDQKIAELTKQFEHSVELNRNNNATEHK
LLFDPKNPEKPILVTQSQSRTREFLVPDLNEHFNINDHQHYFSSAKPSWFKNSSEQYQKQ
IKSKSAIDELNRLDDELSRIIDSGELIEQWNQIYELREKIQKIFEVLLRNDMRFCQIEHV
EHYFWKLLFYKIIEVLRNKMQDANEIERNIFKEKALEIVDTGTRYLESLLTHIEICHKFE
IQDYIGDNAASYRSGLGYIGLALVSAQKIFLFLGDLARYREQINQTNNFGRAKNYYVKAQ
QIVPKNGRPFNQLALLAVYSKRKIDAVYFYMRSLMSSNPFLSAKESLVALFDEIRKKYEF
SQRKREEKNRLRLKEKEHHHFDGNLRKETWVHPEGGVRVHRTAPLDLSMLGKRHDSSDDD
EELEQLDPSELNKRFIISFLHVQGKLITKIGMESFQSCAIQMLKEFKALLHISPIPINSH
RLLQLISLNIYAIDCNVTNSTELKDLTSGSDIQVRSEMQECAIIVALLMFGIIVDRFIEV
LKETLNGDSGNKSNDVSVVKLGVDDHKNMDKSATIKDESKKILKLNEDSKVMLPAIKVFT
DWMFYHENIWNPPPFPFPDYKIGATSNHDLWTGLAILMTLLETVVDANKDYLVLEKEEDC
TLVRLLEDITMAGFTPLKKVTQDPIYCRSDINIEIAQNSLRLQKIKFFGTDFLCKCNPQP
ILKKIISSNGRIEYISVVQNRTGSATDSEILIESFSDEEENDNKKIEDGDINNEQEKNKS
NVKISNNDNEEGDKDEIGKDKETTVDLKKNHNDAAEIRRLLRRKDELERKHKMQEKYNER
LQDILAKSMVALHIEVRPRYLIPDTNCFIDDLNLIKSIANAYDSLHYQLMIPITVIAELE
GLGRGNAKSLTSSSSSTSMPVSSSVMAPALCEKLEKISMHKNIKSGSRNDPQHVAMVTQA
CKNALAFLNSKHPAVKCVTTKGSIINATIFTSEDGPANEQKSNDDKILDTALSLCKKNVD
EKRGDVRYIVREVVLLTNDRNLRVKALTNDIPVRELPDFIRWAGLGSDHDL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13440.t1 CDD cd09885 PIN_Smg6-like 1274 1483 4.30248E-59
9 g13440.t1 Coils Coil Coil 1230 1264 -
8 g13440.t1 Gene3D G3DSA:1.25.40.10 - 539 776 2.9E-46
25 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 123 -
28 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 24 -
20 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 25 57 -
21 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 58 73 -
22 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 84 103 -
23 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 219 263 -
19 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 231 245 -
12 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 246 263 -
15 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 289 303 -
16 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 289 337 -
26 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 321 337 -
24 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 351 440 -
27 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 351 382 -
18 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 383 412 -
14 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 413 440 -
17 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 1176 1216 -
13 g13440.t1 MobiDBLite mobidb-lite consensus disorder prediction 1177 1216 -
4 g13440.t1 PANTHER PTHR15696 SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 571 1481 2.7E-156
5 g13440.t1 PANTHER PTHR15696:SF0 TELOMERASE-BINDING PROTEIN EST1A 571 1481 2.7E-156
2 g13440.t1 Pfam PF10374 Telomerase activating protein Est1 600 704 5.7E-7
3 g13440.t1 Pfam PF10373 Est1 DNA/RNA binding domain 712 1099 2.8E-51
1 g13440.t1 Pfam PF13638 PIN domain 1282 1474 3.3E-18
11 g13440.t1 SMART SM00670 PIN_9 1279 1464 1.1E-13
6 g13440.t1 SUPERFAMILY SSF48452 TPR-like 545 1138 5.69E-64
7 g13440.t1 SUPERFAMILY SSF88723 PIN domain-like 1278 1477 8.83E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values