General information for g1345.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1345 is located on chr_3: 9946997..9956589 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1345 | g1345.t2 | TTS | g1345.t2 | 9945799 | 9945799 |
| chr_3 | g1345 | g1345.t2 | isoform | g1345.t2 | 9945991 | 9947519 |
| chr_3 | g1345 | g1345.t2 | exon | g1345.t2.exon1 | 9945991 | 9947519 |
| chr_3 | g1345 | g1345.t2 | cds | g1345.t2.CDS1 | 9946997 | 9947245 |
| chr_3 | g1345 | g1345.t2 | TSS | g1345.t2 | NA | NA |
Sequences
>g1345.t2 Gene=g1345 Length=1529
CATTTTTGCATGGGAAATTCGCGATAGATTGCTAGCGGATGGTGTTTGTGATAAAAATAA
TGTTCCTAGCGTCAGTTCAATATCTAGAATTTTAAGAAATAAAGTGACCAATCATCATCA
TCACAATACAGCAATTTCGCACGCGCATACACATCCGCACTTGTATAATTCAATTTATCC
AACTTATCCGTACGCAACGCCGCCATCAATTAAAAGTGAAAATTCACCAAACACATCTTC
ATCTTGCGGTAGTCCATCACCGCCCAATAATATTATGCGAAATTGTCATCATTGGCCTCC
ACTGTCACACTCTGCCGCACATATCACACATTCAGTGAATGACATTTTAAATTTTAATCA
AAAATTCGTACAACCTCAAACGTCACCACAATTAGCAGCATCATCGCCCATGATGAATAC
ACATGACACACAAAATTCGCATTCACAAAATTACAACTACTACATGTACTTTCAAAACAC
AGCAATGCATAGCAATGGAATCTCAACTGGAGCCAATTTATAAAAAATAATTCCCTCTTT
TAACTCTTTCGTTTTTCCAACTTGATGGTTTCTCTTGTGATAAACGTTTCTAAGAATTTT
TTCTTTCTCATTTTTTTATGAATATATATTGTACACTTACTTATTATATTTTGTAATTTT
AACCATGCATAATCATTGTTATTATTAATAACTAAAAAAATTCTTTTCCTTTTGTGGTAT
TTACAAGTAAAAGAAAGAAATGAAAAACATACATGTCGATATCATGTATGTGTATATGAT
GAAATTTTTTACTTGTAAACATTTAACAACGTGAAATGTGTCAACTAACAATATTGCAAT
GTGAACTCAAAACTAAGAATTTGCGTCTTTGCCTTAAAGTTCTTGGAATTGATTAATTTT
AAATTAAATAAAATAATAGAATTCAGACTTCCATGAATTTTTTACTTGATATTTTTTGTC
AAGTTGACTTATAAAAAAATTTCTATTATTAATTCAGATTGAATTTTATTCATTTGAAAT
TCAACAAATTTTTATGAAAGTCATTGATTGTTCAATTTACCATGTATTTTAATTGAATGA
AATTCAACCTGAAGAAATTAAAGACATTTTTGTGAAAGTCAACTTGTAATCAACTTGACA
AAAAATATCGATTAAAATATGCATGCAAGTTCAAACCCTATAAAAAAAAACTAAGAAAGC
TCAAGAAATAGAAAAAATATATAAAATCCACAAATAATTCCCTCATATTAATGCATATAA
TAAAGAGAGTTCTCTAGTCTTTTGTGCCTTTTTTACGTGCCTCTTGTTTTAGAAATTAAC
AAAACTATTATTAAAAATTTATAATATTGCATACATTGTAAGGAATCTTACTTAATAATA
ATATTAATATTGTTTTAAAACAAAAGACATTTGTCTAGGGTGCAAAGTCTCATAAGAATA
ATTTTACATCACACATTAATCATGTTCGTGACAGATGAATGATTGAAAAATGAGAAAAAA
AAATAAAACTCTACCTATTAAGACATAAG
>g1345.t2 Gene=g1345 Length=82
MRNCHHWPPLSHSAAHITHSVNDILNFNQKFVQPQTSPQLAASSPMMNTHDTQNSHSQNY
NYYMYFQNTAMHSNGISTGANL
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
