General information for g13463.t1
Yuki Yoshida
6/2/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 3-oxoacyl-[acyl-carrier-protein] reductase FabG.
Parent gene
- The parent gene g13463 is located on chr_1: 30325076..30325774 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13463 | g13463.t1 | TTS | g13463.t1 | 30324843 | 30324843 |
| chr_1 | g13463 | g13463.t1 | isoform | g13463.t1 | 30324897 | 30325774 |
| chr_1 | g13463 | g13463.t1 | exon | g13463.t1.exon1 | 30324897 | 30325021 |
| chr_1 | g13463 | g13463.t1 | cds | g13463.t1.CDS1 | 30324897 | 30325021 |
| chr_1 | g13463 | g13463.t1 | exon | g13463.t1.exon2 | 30325077 | 30325433 |
| chr_1 | g13463 | g13463.t1 | cds | g13463.t1.CDS2 | 30325077 | 30325433 |
| chr_1 | g13463 | g13463.t1 | exon | g13463.t1.exon3 | 30325492 | 30325774 |
| chr_1 | g13463 | g13463.t1 | cds | g13463.t1.CDS3 | 30325492 | 30325774 |
| chr_1 | g13463 | g13463.t1 | TSS | g13463.t1 | 30325862 | 30325862 |
Sequences
>g13463.t1 Gene=g13463 Length=765
ATGGAGTTTGAAGGAAAAGTTGTGATTATAACCGGAGCATCAAGTGGAATTGGGGCTCAA
ACTGCAAAGGATTTTTCAAAACTAAATGCAAATGTTGTTCTCGTAGGACGAAATGCAGAA
AATTTAAAGGCGATCGCTGCTGAGTGTACTGCAGCAGATAAAACGCTTATCGTGCAGGCT
GACGTTAATTTGGACGATGATTGTAAAAAGATTATCAATGAAACAATTAATAAGTGGGGC
AGAATTGATGTACTTGTTAATAGTGCTGGAATAATTGAAACAGGTAGCATCGAAAATACA
TCAATTGAGCAGTATGATCGAGTCATGAATACAAATATGAGATCTATTTACTTGCTCACA
ATGCTTGCGGTGCCTTATTTGGTTGCTACACAGGGAAATATCGTCAATGTATCGAGCGTA
AATGGAATTCGAAGCTTCGCTGGCGTGCTCGCATATAATTTGTCAAAAGCGTGTGTCGAT
CAATTTACAAGATGCACTGCACTTGAACTAGCTGCTAAAAATGTTCGTGTCAATTCAGTA
AATCCAGGTGTTATTATCACAAATATCCATAAAAGAGGAGGAATGAATGATGAAACTTAT
GCTGCATTTTTAGAAAGATCTAAAACTACGCATCCATTAGGCCGTCCAGGAACAGTTGAT
GAAGTGTCAGAAGTCATCACTTTCCTTGCAAGTTCTAAAGCAAGTTTTATAACTGGTGCT
CAAGTTCCTATCGATGGTGGTCGTCATGCAACATGTCTTCGTTAA
>g13463.t1 Gene=g13463 Length=254
MEFEGKVVIITGASSGIGAQTAKDFSKLNANVVLVGRNAENLKAIAAECTAADKTLIVQA
DVNLDDDCKKIINETINKWGRIDVLVNSAGIIETGSIENTSIEQYDRVMNTNMRSIYLLT
MLAVPYLVATQGNIVNVSSVNGIRSFAGVLAYNLSKACVDQFTRCTALELAAKNVRVNSV
NPGVIITNIHKRGGMNDETYAAFLERSKTTHPLGRPGTVDEVSEVITFLASSKASFITGA
QVPIDGGRHATCLR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g13463.t1 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 252 | 0.00000 |
| 2 | g13463.t1 | PANTHER | PTHR43975 | ZGC:101858 | 1 | 253 | 0.00000 |
| 11 | g13463.t1 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 7 | 24 | 0.00000 |
| 3 | g13463.t1 | PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 80 | 91 | 0.00000 |
| 8 | g13463.t1 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 80 | 91 | 0.00000 |
| 6 | g13463.t1 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 126 | 142 | 0.00000 |
| 4 | g13463.t1 | PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 132 | 140 | 0.00000 |
| 5 | g13463.t1 | PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 152 | 171 | 0.00000 |
| 10 | g13463.t1 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 152 | 171 | 0.00000 |
| 9 | g13463.t1 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 173 | 190 | 0.00000 |
| 7 | g13463.t1 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 212 | 232 | 0.00000 |
| 1 | g13463.t1 | Pfam | PF13561 | Enoyl-(Acyl carrier protein) reductase | 12 | 249 | 0.00000 |
| 13 | g13463.t1 | SMART | SM00822 | This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. | 6 | 188 | 0.00092 |
| 12 | g13463.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 4 | 250 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
## [1] "No matching GO terms"KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
