General information for g13483.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Fatty acid synthase.
Parent gene
- The parent gene g13483 is located on chr_1: 30400847..30412761 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13483 | g13483.t1 | isoform | g13483.t1 | 30399815 | 30401774 |
| chr_1 | g13483 | g13483.t1 | exon | g13483.t1.exon1 | 30399815 | 30399843 |
| chr_1 | g13483 | g13483.t1 | cds | g13483.t1.CDS1 | 30399815 | 30399843 |
| chr_1 | g13483 | g13483.t1 | exon | g13483.t1.exon2 | 30399900 | 30401349 |
| chr_1 | g13483 | g13483.t1 | cds | g13483.t1.CDS2 | 30399900 | 30401349 |
| chr_1 | g13483 | g13483.t1 | exon | g13483.t1.exon3 | 30401562 | 30401774 |
| chr_1 | g13483 | g13483.t1 | cds | g13483.t1.CDS3 | 30401562 | 30401774 |
| chr_1 | g13483 | g13483.t1 | TSS | g13483.t1 | NA | NA |
| chr_1 | g13483 | g13483.t1 | TTS | g13483.t1 | NA | NA |
Sequences
>g13483.t1 Gene=g13483 Length=1692
ATGGAATTTTTCATAGAATCACTTGGAAAATTATTCCAACAAGGAGTTGATATGGATATT
TCAAAACTTTATCCACCGATTCAGTTCCCAGTTTCACGAAATACTCCAATGATTTCACCA
AATATTAAATGGAATCATACAGAAAACCATTTTGTTCCTCATTTTGACTCATATAATACT
TTTGAACGTAGGAATATCATTATTAATATTAGTGATAGAAAGTTTGAATTTATTCAAGGT
CATTTAATTGACGGTCGATGCCTTTTCCCAGCAACTGGATGGATCTTTTTAATTTGGGAA
ACATTTTCGATGATGATTGGCATGAATTTTGAGAAAGTCAAAGTTGTTTTTGAAGATATT
CAATTTTTGCGTGCAACAGCATTGAATAAGAATCAAGATGTTTTGATAACAATTTCGATT
CATCGTGGAACAGGAAGGTTCGAGGTCATTGAAGGAGTTTCAGCTGTTGTTCATGGATAT
ATAAGACAAGAAGAAGAAATTGAAATGTCTGAAATCACAGTGTTGAGTGATGAAAATACA
TTGACTTTAGGAGCGGATGATTTTTATAAAGAAATGCGACTTCATGGTTTTTGTCATTTG
GGAGAATTTCAAGGCATTAAAGAAATCCGACATGATGGATTGAAAGGAAAAATCAAATGG
GCTTTCAATTGGATTACATTTATTGATAGCATGACACACTTTGAAGAACTTGAAACAAAT
GCTAGGACACTTGCATTACCAACAAATATAAGAAAGGTTGTAATTGATCCAATTTTGCAT
TATCAGATTATGGAACGCAAACAAAAAGAACTTGAAGGTGTTGAAGATGACAAAAAAGAA
ATTTTATATGATGTGAAAATTTCACCTTACTTGAAAATTATTCAAGCAGGTGGTGTTGAA
ATTCATGATAAAATTAATCGTGTAGTAAACCGGAGAAGACCAAAAGAACCAACACTTGAA
AGTCAAAAGTTCATTCCATTTTTTGCTAATGAAAAATTTTCATTGAAAGATGCTGCAAAA
ATTATCACACAAACGGCTCTTGAGACAATCTTTCAACCAAGATTTTGCTGCATTGAAATT
GATTCTGATAGTGAGCCATTGAGTGAATTTTTGTCCAAAGCTGTGCAAGCAATTCCAATG
GTTCAATCTGATGTGACATTTTTGACATCAAAGGAAAATATTGAACTTGAAAATGTTTCA
ATAAGTTCTGATTCTGAGCTTTCATCATTCAATGGAGTTGATTTGATAATTAAAAGCAAT
TGTGTAAAAGATAACGAATTTTTGGATTCAATCAAATCAGTTTTAAATAGCAACGGTTAC
ATTTTATCAAGAGAACAATCAACAGTTTCAGAAATTGATGAGAAACTTCAACTTGTTGCT
AAGGTTTCACTGGAAAATGGTGAAGTTCTTCATATGCTTCAACTCAAAGACAATATCAAA
CCATTTGAACCACAAAATATAATCGAGATCACATCAAATCTACTGCTCAATCACACAATT
AATGTTTATAAAAATCAATCATGGGGTGGTTATCGTTTCTTAGATTTTAAACCTGATACA
AAACCAATATCAACTAATCAACACTGCTTTGCTAATTGTTTGATAAAAGGTGATTTATCT
TCATTAGCATGGATGAGAGGGCCAATCGATGTTCATAAAAATGAAATAATTAGAATTCAT
TTTCGTCACTAA
>g13483.t1 Gene=g13483 Length=563
MEFFIESLGKLFQQGVDMDISKLYPPIQFPVSRNTPMISPNIKWNHTENHFVPHFDSYNT
FERRNIIINISDRKFEFIQGHLIDGRCLFPATGWIFLIWETFSMMIGMNFEKVKVVFEDI
QFLRATALNKNQDVLITISIHRGTGRFEVIEGVSAVVHGYIRQEEEIEMSEITVLSDENT
LTLGADDFYKEMRLHGFCHLGEFQGIKEIRHDGLKGKIKWAFNWITFIDSMTHFEELETN
ARTLALPTNIRKVVIDPILHYQIMERKQKELEGVEDDKKEILYDVKISPYLKIIQAGGVE
IHDKINRVVNRRRPKEPTLESQKFIPFFANEKFSLKDAAKIITQTALETIFQPRFCCIEI
DSDSEPLSEFLSKAVQAIPMVQSDVTFLTSKENIELENVSISSDSELSSFNGVDLIIKSN
CVKDNEFLDSIKSVLNSNGYILSREQSTVSEIDEKLQLVAKVSLENGEVLHMLQLKDNIK
PFEPQNIIEITSNLLLNHTINVYKNQSWGGYRFLDFKPDTKPISTNQHCFANCLIKGDLS
SLAWMRGPIDVHKNEIIRIHFRH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g13483.t1 | Coils | Coil | Coil | 264 | 284 | - |
| 6 | g13483.t1 | Gene3D | G3DSA:3.30.70.3290 | - | 7 | 63 | 5.0E-15 |
| 7 | g13483.t1 | Gene3D | G3DSA:3.10.129.110 | - | 65 | 315 | 2.1E-62 |
| 2 | g13483.t1 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 2 | 472 | 2.2E-110 |
| 4 | g13483.t1 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 2 | 472 | 2.2E-110 |
| 3 | g13483.t1 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 493 | 554 | 2.2E-110 |
| 5 | g13483.t1 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 493 | 554 | 2.2E-110 |
| 1 | g13483.t1 | Pfam | PF14765 | Polyketide synthase dehydratase | 73 | 255 | 1.3E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
