General information for g13483.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Fatty acid synthase.
Parent gene
- The parent gene g13483 is located on chr_1: 30400847..30412761 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13483 | g13483.t3 | isoform | g13483.t3 | 30400435 | 30412761 |
| chr_1 | g13483 | g13483.t3 | exon | g13483.t3.exon1 | 30400435 | 30400847 |
| chr_1 | g13483 | g13483.t3 | cds | g13483.t3.CDS1 | 30400444 | 30400847 |
| chr_1 | g13483 | g13483.t3 | exon | g13483.t3.exon2 | 30408027 | 30408431 |
| chr_1 | g13483 | g13483.t3 | cds | g13483.t3.CDS2 | 30408027 | 30408111 |
| chr_1 | g13483 | g13483.t3 | exon | g13483.t3.exon3 | 30408685 | 30408840 |
| chr_1 | g13483 | g13483.t3 | exon | g13483.t3.exon4 | 30412720 | 30412761 |
| chr_1 | g13483 | g13483.t3 | TTS | g13483.t3 | 30412921 | 30412921 |
| chr_1 | g13483 | g13483.t3 | TSS | g13483.t3 | NA | NA |
Sequences
>g13483.t3 Gene=g13483 Length=1016
TATAAAGAAATGCGACTTCATGGTTTTTGTCATTTGGGAGAATTTCAAGGCATTAAAGAA
ATCCGACATGATGGATTGAAAGGAAAAATCAAATGGGCTTTCAATTGGATTACATTTATT
GATAGCATGACACACTTTGAAGAACTTGAAACAAATGCTAGGACACTTGCATTACCAACA
AATATAAGAAAGGTTGTAATTGATCCAATTTTGCATTATCAGATTATGGAACGCAAACAA
AAAGAACTTGAAGGTGTTGAAGATGACAAAAAAGAAATTTTATATGATGTGAAAATTTCA
CCTTACTTGAAAATTATTCAAGCAGGTGGTGTTGAAATTCATGATAAAATTAATCGTGTA
GTAAACCGGAGAAGACCAAAAGAACCAACACTTGAAAGTCAAAAGTTCATTCCAGATTTT
GTAATTTTGGTCCACTATTTTTATTATAAATTTTTAAGCTCTTACAAAATACAAAAAAAG
AAAAAAAGCAAGAATTAATAAAAAATTTGTGTGAAGCATTCAAAGCACATATTGTGTATA
GAAGAAAAAATGCGAGAAGCGTATGAGATTCGTAAGTGCCTCTAAAGCACATTAGTGCAC
TTCTTAATCTCTGAATGTAAAAACTACATCAACAAGGAAAAGAACTCCGTTGACAATTGC
CAATGAACCTTTTGTCAAACCAACTTTCTTTGAGTCGGTGGTTCCAAAGCCAAGAGACTC
TGACACTTTACTGACTGAGTTTCCATTCCAGTGCTGCAAGATCAATACACCTGATGTGAT
GAACATGGCGCATCCAATCAATGAGAAGAAGAGATCTGTCTCTTATTGATGGGAGTTCCC
ATCATGTAGCCAGCAAATAAGGCAACTAAGATGATTGTGAATCCAACAAAGGTTCCATTA
ATGAGCATGACAGTGTGATGGTCAATGTATTCACTTGAATTATAGTGAAGGCCCACGCAT
GCCAATGTTACAAGCAATTCCAAGAATTTGATGATTGATAATCTGCTCAATGCCAT
>g13483.t3 Gene=g13483 Length=162
MRLHGFCHLGEFQGIKEIRHDGLKGKIKWAFNWITFIDSMTHFEELETNARTLALPTNIR
KVVIDPILHYQIMERKQKELEGVEDDKKEILYDVKISPYLKIIQAGGVEIHDKINRVVNR
RRPKEPTLESQKFIPDFVILVHYFYYKFLSSYKIQKKKKSKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13483.t3 | Coils | Coil | Coil | 73 | 93 | - |
| 3 | g13483.t3 | Gene3D | G3DSA:3.10.129.110 | - | 1 | 124 | 8.6E-27 |
| 1 | g13483.t3 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 2 | 137 | 9.5E-21 |
| 2 | g13483.t3 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 2 | 137 | 9.5E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed