General information for g13484.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13484 is located on chr_1: 30402947..30412761 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13484 | g13484.t2 | isoform | g13484.t2 | 30401789 | 30412761 |
| chr_1 | g13484 | g13484.t2 | exon | g13484.t2.exon1 | 30401789 | 30402069 |
| chr_1 | g13484 | g13484.t2 | cds | g13484.t2.CDS1 | 30401789 | 30402069 |
| chr_1 | g13484 | g13484.t2 | exon | g13484.t2.exon2 | 30407811 | 30408430 |
| chr_1 | g13484 | g13484.t2 | cds | g13484.t2.CDS2 | 30407811 | 30407835 |
| chr_1 | g13484 | g13484.t2 | exon | g13484.t2.exon3 | 30408680 | 30408840 |
| chr_1 | g13484 | g13484.t2 | exon | g13484.t2.exon4 | 30412720 | 30412761 |
| chr_1 | g13484 | g13484.t2 | TTS | g13484.t2 | 30412921 | 30412921 |
| chr_1 | g13484 | g13484.t2 | TSS | g13484.t2 | NA | NA |
Sequences
>g13484.t2 Gene=g13484 Length=1104
ATGTTGGCACTTGCAAGAATTCCGGATAATATTCGAGACAGGATTGCTCAACAATGTGTT
TTAGGTTTTGAATTTTCAGGCCTAAAAGCTGATAATACACGTGTAATGGGAATTGCTTTG
AATGCCGGAGGTTTATCCACACATTATGACAGCAAATACTCAATTCTTTGGAATGTACCT
GAAAATTGGAGTTTAGAAGAAGCAGCGACTGTTCCATTGGTTTATTTCACTGTCTATTTT
GCATTTTTTGTCACAACAAAAATCAAAAGTGGCAAAAGCATTTTAATTCTTTATTGGACA
TTTTAAAATGTTTCATATTAATGCTTTACATTCAATAAAAATACTTATTTGAACATTTAT
ATTAAAAGACCATATTTTGTAAAAATCATTTTTATTATTTTTGTAAACTTTTATTGATTG
TTTTGTGTCTTTATGTGAGGGATGAATGAATTTTATGTGAACTTCAATTTTTGGTATTAT
TTTGATATTTTTGTGAGAGATTTTGTAATTTTGGTCCACTATTTTTATTATAAATTTTTA
AGCTCTTACAAAATACAAAAAAAGAAAAAAAGCAAGAATTAATAAAAAATTTGTGTGAAG
CATTCAAAGCACATATTGTGTATAGAAGAAAAAATGCGAGAAGCGTATGAGATTCGTAAG
TGCCTCTAAAGCACATTAGTGCACTTCTTAATCTCTGAATGTAAAAACTACATCAACAAG
GAAAAGAACTCCGTTGACAATTGCCAATGAACCTTTTGTCAAACCAACTTTCTTTGAGTC
GGTGGTTCCAAAGCCAAGAGACTCTGACACTTTACTGACTGAGTTTCCATTCCAGTGCTG
CAAGATCAATACACCTGATGTGATGAACATGGCGCATCCAATCAATGAGAAGAAGAGATC
TCCAAGTCTCTTATTGATGGGAGTTCCCATCATGTAGCCAGCAAATAAGGCAACTAAGAT
GATTGTGAATCCAACAAAGGTTCCATTAATGAGCATGACAGTGTGATGGTCAATGTATTC
ACTTGAATTATAGTGAAGGCCCACGCATGCCAATGTTACAAGCAATTCCAAGAATTTGAT
GATTGATAATCTGCTCAATGCCAT
>g13484.t2 Gene=g13484 Length=101
MLALARIPDNIRDRIAQQCVLGFEFSGLKADNTRVMGIALNAGGLSTHYDSKYSILWNVP
ENWSLEEAATVPLVYFTVYFAFFVTTKIKSGKSILILYWTF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13484.t2 | Gene3D | G3DSA:3.90.180.10 | - | 1 | 98 | 6.9E-22 |
| 1 | g13484.t2 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 1 | 96 | 9.5E-26 |
| 2 | g13484.t2 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 1 | 96 | 9.5E-26 |
| 6 | g13484.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 67 | - |
| 7 | g13484.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 85 | - |
| 5 | g13484.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 86 | 101 | - |
| 3 | g13484.t2 | SUPERFAMILY | SSF50129 | GroES-like | 17 | 89 | 8.37E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed