Gene loci information

Transcript annotation

  • This transcript has been annotated as Fatty acid synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g135 g135.t1 isoform g135.t1 1243659 1251045
chr_3 g135 g135.t1 exon g135.t1.exon1 1243659 1244065
chr_3 g135 g135.t1 cds g135.t1.CDS1 1243659 1244065
chr_3 g135 g135.t1 exon g135.t1.exon2 1244164 1244555
chr_3 g135 g135.t1 cds g135.t1.CDS2 1244164 1244555
chr_3 g135 g135.t1 exon g135.t1.exon3 1244615 1244958
chr_3 g135 g135.t1 cds g135.t1.CDS3 1244615 1244958
chr_3 g135 g135.t1 exon g135.t1.exon4 1245013 1249420
chr_3 g135 g135.t1 cds g135.t1.CDS4 1245013 1249420
chr_3 g135 g135.t1 exon g135.t1.exon5 1249551 1249623
chr_3 g135 g135.t1 cds g135.t1.CDS5 1249551 1249623
chr_3 g135 g135.t1 exon g135.t1.exon6 1249681 1249811
chr_3 g135 g135.t1 cds g135.t1.CDS6 1249681 1249811
chr_3 g135 g135.t1 exon g135.t1.exon7 1250630 1251045
chr_3 g135 g135.t1 cds g135.t1.CDS7 1250630 1251045
chr_3 g135 g135.t1 TSS g135.t1 NA NA
chr_3 g135 g135.t1 TTS g135.t1 NA NA

Sequences

>g135.t1 Gene=g135 Length=6171
ATGTGTGAAAGTGAAAATGATATTGTAATTAGTGGAATTTCTGGACGATTTCCAAAATCA
AATAATGTCCATGAACTTGCTGAAAATCTTTATAATAAAATTGACATGACATGTGATAAA
GAAGATCGTTGGAAACATGTTTATCCAAAAGTATCTCCAAGATTTGGTAAAATTTCTAAC
ATTGAAAAATTCGATGCACCTTTTTTTGCAATGTTAAATAAACAAGCAAAATGGACTGAT
CCACAAATGAGGATGTTACTTGAGCATTCATATGAAGCAATTTTGGATGCTGGAATTAGT
CCGCAGTCGTTGATGGGTAGCAAGACTGCTGTCATCGTTGGTGCAATTAGTTCTGACTCT
AGAGACTATTTTTGTAAGAACATCACACCGACTTACGATGGTTTTCGTATTATTGGACAT
GGAAATTGCCATTTAGCAAATCGTATTTCTTACCTCTTTGGTCTTCATGGACCCTCACTT
GTTCTCGACACAGCATGTTCAAGTTCAGCAAGTGCTTTGGATGTGGCATATCATTACATT
AAATCAGGCGTTTGCGATGCTGCTCTTGTTGGAGGAATTCAACTTAATTTAAATATACTC
ATTTTTAGTGAATATAATGGACTCGGAATTCTTGCTTCTGATGGCGTTTCAAGGCCATTT
GATGAAAATGTTTCAGGTTTTTGTCGAGCAGAATCTATTTGTGCTGTTTTCTTGCAAAAA
CGAAAAGATTCAAAAAGAATTTATGCTCAATTTGTACATTCATTGTCTAGTAATGATGGT
TTTAAAACTGAAGGTCAATGGTTGCCATCAAGAGATGAACAAGTTAGATTAATGAATGAG
TTTTATAATCAAATTGATGTTGATAAAAAAGACATCAAATTTATTGAAGCGCATGCAACT
GGCACTTTTAAGGGTGATATACAAGAAGTTACAGCTGTTGATGAAGTTTTCTGTAAAAAT
CATGATGATCCATTAATTATTGGAACTGTGAAATCTAATATGGGCCATACTGAAGCTGCT
AGTGGTGTTGTATCATTAACAAAAATTGTAATTGCGTTCGAGAATGGAAATTTTCCTCCA
AATATTAATTTAACAAATAAGCGATCAGATATCGAAGCATTCAATGATGGTCGTATTCAA
GTTGCTACTGATGCTGTTCCAATTGACTCTGACTATATTGCATTAAATTCTTTTGGCTTA
GGTGGCTCAAATGTTCATGCTTTGTTCAAAAGAAATCCAAAAATTAAAATCAACAATGGT
CTGCCAAAAGATTCTCTTGAGAGAATTGTATTATGGTCAGGAAGAACTGAAGAAGCTTTA
AATACAATTTTTGATGACATTGTAAGTCGACCACTTGATGCTGAATACATTGCATTACTG
CATAATACACAAATTATGACATCTGATGCAAACACTTATCGAGGTTTTGGAATTTTCAAG
AAAAATAATTTTGACAATGCAATTTGCATTCAACGTTCAATGAAATTATTTGATGGAATT
CGACGGAAAATTGTCTTCCTTTATACTGGCATGGGCACACAATGGCATGAAATGGGATGT
GGTTTGATGGAAATTCCAATTTTTGCTGAATCTATTGAAAAATGTCATAAAATATTGGCA
GAAAAATGTGACAATTTCGATCTTAAAGCACTTTTTGAATCTGATGATAAAAACAAATAT
AATGACATTAAAAATTCTTATCTTGGTATAATTTCAATTGAAATTGCACTAACAGATTTG
TTGAATGCACTTGAAATCAAACCGACCTTCATAATTGGTCATTCAGTAGGTGAAATCGGA
TGTGCTTATGCTGATGGATGTTTAAGTGCTGAAGAAGCTTTACTGATTGCATTTAAAAGA
GCAAAAGTTAATCAAGAGGCAAATATCATGAAAGGTGCTATGGCTGCAATCGGAATGCAT
TATAAAGAACTTGAACCAATATTACCTGCAGAAATTGATATTGCATGTCACAACAGTCAT
GAATCGACAACAATCAGTGGACCTAAAGAATCTGTTTTAGAGTTTATCAATAAAATGACA
AAAGATGGTATTTTTGCTAAAGAAGTCGCTTGTGCTGGTATTCCATTTCATAGTCGATAT
ATTTCAAAAGTTAGTGATGAAATGTACAAGAATTTCAGTGAAATTTTAAAGAATCCCAAA
AGACGTTCACCAAAATGGATAAGTTCTTCTTTTCCTGAGGATCGATGGGATGAAGATGAA
GTTAAAATTTGTGGTTCACAATATCATGTTGCAAATGCATTAAATCCAGTTTTATTTGAA
GAAGCAGCTTTGAAACTTCCTAAGAATTCAATCGTTATTGAAATTTCACCAAATGGAATT
TTAAATTCAATTGTTAAATCATTATTGAAAAAATCTTCATATGTTGCATTGGCTCAGAAA
AGTGAAAATGCAAAGCAGCAAACATTTGAAGCTATTGGGAATCTATTTCAATATGGCATT
GACATGAATGCAGCTGGAATTTATCCTGCAATTCAATTTCCTGTTTATCGTGGAACTCAA
ATGATTTCACCAAAAATCAAATGGAATCACAATGAAAATCATTTTGTTGGTTATTTTGAT
TCAAAATTTGAACTTGAAAGGTTTTCAACGATTATAAATTTTGATAGTGAAGAATATTCA
TTTTTAAAGGATCATATAATTGATGGCAAATTAATTTTGGCTGGAGCATCTTATCTCGTA
TTCATTTGGAAACTTTTTGCATTGATGAATTCTGCTGATTTTGAAAAATTCAAAGTTACA
TTTAAGGACATAGAAATGTTAAGAGCTACAAGAGTTTTGTCTAACAAAGAAGTTTCAATT
TCAATTTCTATACAACGAAATACAGGGCATTTTGATTTAAGTGAAGGCAATATGACTATA
ATAAAAGGGATAATTTTTCATGATGATAATCTTAAAATTGAGCGAGTTGAACCATATGAG
TTAAATGAAGGTGCAACAAAGTTGCAACGTGAAGATTTTTATAAGCATGCACGCATTCGA
GGATATCAATACAGAAAAGCTTTTCAAACTATTAAAGAAATTTCATTTGATGGCAAATTT
GGTAAAATTCAATGGAAAGACAATTGGACAACATTTATAGATGCACTGTTGCAGACACCA
ATATTAGAAGATGAAAATAAAGACATAGGTGTTCCATACAAGATTAATGAAATTTCAATT
GATCCAATTATGCATTTAGAAATGGTAAAAGAACAAAAAGAAGAAATTTTATTTGAATTT
GAAGCATGTACTGCTACAAACAGATCAACATGTGGTGGAGTTGTCATTTCAGGACTTCGT
GGAGCAACAATACCAAGGCAACAGCAAAAGAAACCACTTTTTGAGTCTTACAAATTTATA
CCTTATATTTCGAATGACTTGATGCGGTTAACTGATTTTGATATTTTAAAAATTTTCTTT
ACAACCTTCTGTGAAAATTATTCCAAATTCGAAATCACAGTTGTTGAAATCAATGACAAG
AATGAAGGACATGCAATTTCACATTTGTTAAAAATCATGCAAGAATTTCTTAATAAAACA
AATCTCAAATTGCTGACATCGAGTAAAGTTGAGATTAAAAATGTTGATGTAACAATTGAT
GAAGATTTAAAGACTTTTGTCAATAGAAATTCAAATGCAAATATTGTCATAAAGGACAAT
TGTTTAAATGATTGTGAATTCTTACAAATGATCAACACAAGTATGACAGAAAATGTGGTT
TTTATTTCAAAAGAAGATTCAAATTGCATCATTAATAATGAGAACTTAAAAGTGATTTCT
AAAATTCATACAGTAGACAATTTTACTTTTATCATGTTTCAACACAAATCACTTAACATA
AATGAACATCAGACGACTTACAAATGCATTAAAATCACACCAAATCCATCTGATTGGTTG
GAAAATTTACAGAAAATCGTTCAAGATGTAGAAAATAATGAGCAAATCGTAATTTATTCA
CAAAATACAAAATCAGGAATTCTTGGTTTTTACAATTGTCTTCGTTTTGAACTTGGTGTT
AATAAGAAAATGATTTGTGTTTTAATTGATGATGAAAATGCTCCTAAATTTGATCCAAAT
GATTCATTTTACTCTAACCAGTTGAAGAGAGGACTTACAATTAATGTTCTAAAAGACGGT
AAATGGGGAGCATTAAGACATTTCAATATTACTCGCGATCTAAATCATAAACCGCAAACA
GGACACTGTTTTGCTAATTACAGCAGAAGTGGAAACTTATCAAGCATTAAATGGCGACAA
GGCGATTTGAATAATAAATTGTCAGAAAAATCTGATGATTTGATCGCAATTTACTACAGT
TCACTTAATTTCAAAGATATTTTATATGCTCATGGTTATATAAAAGATTCTACAAATCTT
TCAAGAGAATGTGCTATTGGATTTGAATTTTCTGGAATTCATTTGAAGACTGGAAAACGT
GTGATGGGAGTATCAAATAAAACTGGATGCATTTCAACTTTGTATGACATTTCTGATGCA
TATCTTTTTAATGTTCCTGAAAATTGGTCACTTGAAGAAGCAGCAACTTTTCCATCAGCT
TATGCCACAGTTTACTATTCATTTTTCAAAGCAACTAAAATTCAAAAAGGACAATCAATT
CTTATACATTGTGGAGCGGGTGGCGTCGGTCAAGCTGCTTTAAATGTTGCTTTTGCTTAT
GGACTTGAAGTTTTTACAACAGTTGGCACAGATGAAAAACGAGAATTTTTATTGAAAAAT
TTTCCTCAACTCAAATCAGAAAATATCGGAAATTCACGTGACACAAGTTTTCTAAGAATG
ATTATGAAGCAAACGAATAAGAAAGGCGTTGATTATGTTTTAAATTCATTGAGTGGTGAA
AAATTAATGAAATCTATTGAATGTCTGAAAAAAGGTGGTGTTTTTCTTGAAATTGGTCGT
GCTGATATTATCAAAGGAACAACTATAAATTTAGATTTTTTGGGAAAGGATATTGAATTG
AAATCGATTCGTGTTGACCAACTTCAGGAGAATGGAGAAGATTTTAAGGATTTATTAAAA
TTGATGGGAGAAAGTTTAGAAACTGGCATAATGAAACCGTTAAATTACACAATTTTTGAT
GCAGCTGATGTTAAAAAAGCTTTTCAATTTATGGCATCTGGTAATCATATTGGAAAAATT
TTGCTGAAAATTCGTGAAAGCAATGATCAATCACTGCCACTTAATGTTTTGCCAAGATTC
TATTGTGATCCTGAATGTTCATATATCGTTGTCGGTGGACTTGGTGGTTTAGGCTTGGAA
TTTTCACAATGGTTAGTAACTCGTGGATGCAGAAAATTAGTACTGAGCTCAAGCCGAGGA
ATTTCAAATCAATATCAAAATTTTAAAATAAATTTTTGGAAAAAGTATGGCGTTGAAACT
ATAGTCAGCACTTCAAATATAATTACAATTGAAGGTTGCAATGAGCTTATTCAGACAGCT
TTACAACTTGGAAAAGTTGATGGCATTTTTAATTTTGCTGTAATTCTTCATGATAGAATT
TTTGTTAATCACGCATTAGAAATGTTCAACAAGTCTTTAGCACCGAAAGCTATTGCTACA
AAACATCTTCATGATGCTTCAATTGAACTTTGTCCAGACCTAAAACATTTTGTTGCAATT
TCAAGTGTTTCTTGTGGACGAGGATTTGGAGGTCAAACAAACTATGGAATGAGTAATTCG
GTTATGGAAGAAGTTGTTAACATGAGATTTAAGATGAAGCTACCTGCAAAAGCCATTCAA
TGGGGGCCAGTTGCTGATGTTGGATTACTCTCTGATGTTGAAAATCCTACAATATATTTT
TATGATTTTCAATCAATAACATCAATTCTTGAATCACTTGATACACTTTTGCTACATCCT
GATGCAATTGTTGGTTGTGTTGTTTTAGCAGATAAATTTGATGAATCAAATAAACAAATG
GGCTTGATTGATATGCTAATGAAATTGTTAAATATTGAAGATCGAAAATCAATTTCAATG
AACTCAAATTTTTCACAACTTGGAATTGACTCATTAGTTGGAATTGAAATGCAACAATTA
ATTGAACGTGAATATGGTTTGACACTGACAGCAAAAGAAATTCGAACTTTATCGCTTGCA
GAACTTGAAATGCGTTTTAATACAAAAAATGAAAATACTGTGAAGAAATAA

>g135.t1 Gene=g135 Length=2056
MCESENDIVISGISGRFPKSNNVHELAENLYNKIDMTCDKEDRWKHVYPKVSPRFGKISN
IEKFDAPFFAMLNKQAKWTDPQMRMLLEHSYEAILDAGISPQSLMGSKTAVIVGAISSDS
RDYFCKNITPTYDGFRIIGHGNCHLANRISYLFGLHGPSLVLDTACSSSASALDVAYHYI
KSGVCDAALVGGIQLNLNILIFSEYNGLGILASDGVSRPFDENVSGFCRAESICAVFLQK
RKDSKRIYAQFVHSLSSNDGFKTEGQWLPSRDEQVRLMNEFYNQIDVDKKDIKFIEAHAT
GTFKGDIQEVTAVDEVFCKNHDDPLIIGTVKSNMGHTEAASGVVSLTKIVIAFENGNFPP
NINLTNKRSDIEAFNDGRIQVATDAVPIDSDYIALNSFGLGGSNVHALFKRNPKIKINNG
LPKDSLERIVLWSGRTEEALNTIFDDIVSRPLDAEYIALLHNTQIMTSDANTYRGFGIFK
KNNFDNAICIQRSMKLFDGIRRKIVFLYTGMGTQWHEMGCGLMEIPIFAESIEKCHKILA
EKCDNFDLKALFESDDKNKYNDIKNSYLGIISIEIALTDLLNALEIKPTFIIGHSVGEIG
CAYADGCLSAEEALLIAFKRAKVNQEANIMKGAMAAIGMHYKELEPILPAEIDIACHNSH
ESTTISGPKESVLEFINKMTKDGIFAKEVACAGIPFHSRYISKVSDEMYKNFSEILKNPK
RRSPKWISSSFPEDRWDEDEVKICGSQYHVANALNPVLFEEAALKLPKNSIVIEISPNGI
LNSIVKSLLKKSSYVALAQKSENAKQQTFEAIGNLFQYGIDMNAAGIYPAIQFPVYRGTQ
MISPKIKWNHNENHFVGYFDSKFELERFSTIINFDSEEYSFLKDHIIDGKLILAGASYLV
FIWKLFALMNSADFEKFKVTFKDIEMLRATRVLSNKEVSISISIQRNTGHFDLSEGNMTI
IKGIIFHDDNLKIERVEPYELNEGATKLQREDFYKHARIRGYQYRKAFQTIKEISFDGKF
GKIQWKDNWTTFIDALLQTPILEDENKDIGVPYKINEISIDPIMHLEMVKEQKEEILFEF
EACTATNRSTCGGVVISGLRGATIPRQQQKKPLFESYKFIPYISNDLMRLTDFDILKIFF
TTFCENYSKFEITVVEINDKNEGHAISHLLKIMQEFLNKTNLKLLTSSKVEIKNVDVTID
EDLKTFVNRNSNANIVIKDNCLNDCEFLQMINTSMTENVVFISKEDSNCIINNENLKVIS
KIHTVDNFTFIMFQHKSLNINEHQTTYKCIKITPNPSDWLENLQKIVQDVENNEQIVIYS
QNTKSGILGFYNCLRFELGVNKKMICVLIDDENAPKFDPNDSFYSNQLKRGLTINVLKDG
KWGALRHFNITRDLNHKPQTGHCFANYSRSGNLSSIKWRQGDLNNKLSEKSDDLIAIYYS
SLNFKDILYAHGYIKDSTNLSRECAIGFEFSGIHLKTGKRVMGVSNKTGCISTLYDISDA
YLFNVPENWSLEEAATFPSAYATVYYSFFKATKIQKGQSILIHCGAGGVGQAALNVAFAY
GLEVFTTVGTDEKREFLLKNFPQLKSENIGNSRDTSFLRMIMKQTNKKGVDYVLNSLSGE
KLMKSIECLKKGGVFLEIGRADIIKGTTINLDFLGKDIELKSIRVDQLQENGEDFKDLLK
LMGESLETGIMKPLNYTIFDAADVKKAFQFMASGNHIGKILLKIRESNDQSLPLNVLPRF
YCDPECSYIVVGGLGGLGLEFSQWLVTRGCRKLVLSSSRGISNQYQNFKINFWKKYGVET
IVSTSNIITIEGCNELIQTALQLGKVDGIFNFAVILHDRIFVNHALEMFNKSLAPKAIAT
KHLHDASIELCPDLKHFVAISSVSCGRGFGGQTNYGMSNSVMEEVVNMRFKMKLPAKAIQ
WGPVADVGLLSDVENPTIYFYDFQSITSILESLDTLLLHPDAIVGCVVLADKFDESNKQM
GLIDMLMKLLNIEDRKSISMNSNFSQLGIDSLVGIEMQQLIEREYGLTLTAKEIRTLSLA
ELEMRFNTKNENTVKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
26 g135.t1 CDD cd00833 PKS 6 408 9.14129E-128
27 g135.t1 CDD cd05195 enoyl_red 1435 1722 2.52889E-94
25 g135.t1 Coils Coil Coil 2054 2056 -
21 g135.t1 Gene3D G3DSA:3.40.47.10 - 6 411 1.5E-121
19 g135.t1 Gene3D G3DSA:3.30.70.3290 - 426 854 1.3E-147
24 g135.t1 Gene3D G3DSA:3.40.366.10 - 500 819 1.3E-147
20 g135.t1 Gene3D G3DSA:3.10.129.110 - 868 1110 1.4E-56
18 g135.t1 Gene3D G3DSA:3.40.50.720 - 1298 1968 2.8E-236
23 g135.t1 Gene3D G3DSA:3.90.180.10 - 1392 1740 2.8E-236
22 g135.t1 Gene3D G3DSA:1.10.1200.10 - 1974 2056 1.6E-13
9 g135.t1 PANTHER PTHR43775 FATTY ACID SYNTHASE 5 2052 0.0
10 g135.t1 PANTHER PTHR43775:SF23 FATTY ACID SYNTHASE 3 5 2052 0.0
4 g135.t1 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 6 243 9.2E-54
1 g135.t1 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 248 364 2.3E-31
8 g135.t1 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 369 478 3.8E-25
7 g135.t1 Pfam PF00698 Acyl transferase domain 505 791 2.4E-54
3 g135.t1 Pfam PF14765 Polyketide synthase dehydratase 874 1083 3.6E-10
5 g135.t1 Pfam PF00107 Zinc-binding dehydrogenase 1548 1681 9.9E-13
2 g135.t1 Pfam PF08659 KR domain 1747 1926 7.1E-34
6 g135.t1 Pfam PF00550 Phosphopantetheine attachment site 1982 2034 5.9E-6
28 g135.t1 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 157 173 -
34 g135.t1 ProSiteProfiles PS50075 Carrier protein (CP) domain profile. 1973 2053 11.032
32 g135.t1 SMART SM00825 Beta-ketoacyl synthase 8 414 1.5E-77
30 g135.t1 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 507 802 4.4E-25
29 g135.t1 SMART SM00829 PKS_ER_names_mod 1411 1722 2.0E-101
33 g135.t1 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1746 1927 2.4E-10
31 g135.t1 SMART SM00823 Phosphopantetheine attachment site 1979 2037 0.0023
12 g135.t1 SUPERFAMILY SSF53901 Thiolase-like 4 411 4.17E-61
11 g135.t1 SUPERFAMILY SSF52151 FabD/lysophospholipase-like 503 797 9.68E-40
17 g135.t1 SUPERFAMILY SSF55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase 631 687 4.05E-7
15 g135.t1 SUPERFAMILY SSF50129 GroES-like 1429 1536 9.43E-15
14 g135.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1508 1665 8.98E-35
13 g135.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1747 1943 1.09E-25
16 g135.t1 SUPERFAMILY SSF47336 ACP-like 1982 2042 9.03E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031177 phosphopantetheine binding MF
GO:0016746 acyltransferase activity MF
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity MF
GO:0016740 transferase activity MF
GO:0006633 fatty acid biosynthetic process BP
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed