Gene loci information

Transcript annotation

  • This transcript has been annotated as Multidrug resistance-associated protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1350 g1350.t1 TSS g1350.t1 9983925 9983925
chr_3 g1350 g1350.t1 isoform g1350.t1 9984121 9989833
chr_3 g1350 g1350.t1 exon g1350.t1.exon1 9984121 9984153
chr_3 g1350 g1350.t1 cds g1350.t1.CDS1 9984121 9984153
chr_3 g1350 g1350.t1 exon g1350.t1.exon2 9984935 9985243
chr_3 g1350 g1350.t1 cds g1350.t1.CDS2 9984935 9985243
chr_3 g1350 g1350.t1 exon g1350.t1.exon3 9985296 9985765
chr_3 g1350 g1350.t1 cds g1350.t1.CDS3 9985296 9985765
chr_3 g1350 g1350.t1 exon g1350.t1.exon4 9985819 9986747
chr_3 g1350 g1350.t1 cds g1350.t1.CDS4 9985819 9986747
chr_3 g1350 g1350.t1 exon g1350.t1.exon5 9986803 9987547
chr_3 g1350 g1350.t1 cds g1350.t1.CDS5 9986803 9987547
chr_3 g1350 g1350.t1 exon g1350.t1.exon6 9987613 9987686
chr_3 g1350 g1350.t1 cds g1350.t1.CDS6 9987613 9987686
chr_3 g1350 g1350.t1 exon g1350.t1.exon7 9987748 9988071
chr_3 g1350 g1350.t1 cds g1350.t1.CDS7 9987748 9988071
chr_3 g1350 g1350.t1 exon g1350.t1.exon8 9988125 9988416
chr_3 g1350 g1350.t1 cds g1350.t1.CDS8 9988125 9988416
chr_3 g1350 g1350.t1 exon g1350.t1.exon9 9988483 9989833
chr_3 g1350 g1350.t1 cds g1350.t1.CDS9 9988483 9989833
chr_3 g1350 g1350.t1 TTS g1350.t1 9989888 9989888

Sequences

>g1350.t1 Gene=g1350 Length=4527
ATGAATGCCGAATTTTGTGGCAGTGAATTTTGGGACTCAGATCTGTCATGGCGACCAGAA
AATCCTGATTTTACATTTTGCTTCAAAAATTCAGTACTGATATGGGTTCCATGTGCATTT
CTCTTCATTTTCTCTCCACTTGATTTTTATCGGCACTACAATAGTCGATACAGCAATATT
CCAGCATCGTTTTTGAATATCACAAAATTTTGCATCATGGGATTTCTGATTCTATTGACA
ATTGCTGACTTAACCATGATGGTTTTACTAAGAGCAAATAAACATGAGGAAACAATTTTT
GGTGTGCAGTTTGTATCAACTGGTCTTAAAATTTTAACTTTTATCTTAGCTGTGATACTT
CAACAATTTCATCTCAAAAAAGGACATCGTAGTTCAATTTTTCTATTTATTTTCTGGCTA
GTTCTTACAATTTGTGCCATTCCACAGTTACGTTGGGAAGTTCGTGAATTTAATGTAGAT
TTTAATAACACTGCTAGACTATGGGCTTCATATCACTGCATCAGTTTCATAATCTTCTTT
TCGTGTGCATCAATCATGACTGTGTTGTGTGCGTTCAGTGATAAGGAACCTCGAGTTTCG
ACATATCCAAAATATGCAAATCCTAGTCCCGAGTTGAGTGTTGGTTCTCTTAATCAATTG
TTATATCAATGGTTCACATCGACTGCATGGAAGGGTTTCAAAAATCCTCTCACTGAAGAG
GACATTTATGACATTAATCCACAATTTGCGACTAGCGAGTTGACTCCAAAATTTGATAAA
TATTTTCAGGAAAGCATTGAAAGGAATAAAAAAAAATCAAAGCCATTAGCATCAAAACAA
ACAACTGAGGAAGAAGATGAAGAATTTTCAGAGCAAGCAACAAATGGTTCAGTTATGGGT
GCTTTATGGCATGCTTTTGGAGGAAAAATGATTTTCTCACTCTTTCTAAGAATTATTACT
GACCTTTTACAATTTGCTCAACCATTTCTACTAGGAACATTGATTGATTATATTGCAACT
GATGGAGCTTTATGGAAAGGATTATTTTTAACATTCACATTCTTTTCTATTTCACTTATT
TCTGCTATTCTCAATAATTATCAAATGATGCTCGCATTTCATGTTGGATTTAAAGTTCGA
ACTTCTTTAATTAGTGCAGTTTATAGAAAAGCATTGAAAATTTCAAGCAGTGTTAAGAAA
AATGCAACAATTGGACAAATTGTGAATTTAATGGCTGTTGATGCACATCGGTTTTATGAT
ACTTCGCCTTATATACTTTATGGATTAACAGCACCAATGATTATGGCATTAGCTTTATAT
TTCTTATGGGAAGTTATTGGTGTTTCTGCATTTGCTGGTCTTGCTGTTTTAATTATAATT
TTTCCAATTTCTGGAGTTGTCGCAAATGAAATGCAAAAAGTTCAACACAAACAAATGTCA
ATCAAAGATGAAAGAGTAAAAAAAATTAGTGAAATCCTTGGTGGAATTAAAGTTATAAAA
TTTTATGCATGGGAACAAAGTTTTCAAGAACAAATTTCTGAAACTCGTAATCAAGAATTG
AAATATCTTCGTAAAAATGCAATGCTAAATGCAAGTACAGAGTTTTTGTGGACTTTAGCA
CCTTTTTTTGTTTCATTTGCAACTTTTACAACTTATGTGATGCTTGGGAATGTTTTAAGA
GCTGATGTGGCTTTTGTTGCGATTGTTCTTTTCAATATTTTACGATTACCAATTACAATG
CTTCCAATGACAATAAATTCTATAATGATGGCAATTGTGTCAGCAAAACGTATAACAAAA
TTTATGAATTCAAAAGAAATTGATCCAAATAATGTTAGTCATAATCCAAGTGAATTTGCA
ATTGAATTTAATAATGCAACATTTTCATGGGATGGCAATGAAAAAATTCTTAAAAATATA
AATTTGAAAGTTCCTAAAGGAAGTTTAACTGCAGTAGTTGGTCAAGTTGCATCAGGAAAA
TCATCATTAATTAGTGCATTGTTGGGTGATATGGAAAAATTGGAAGGAACAGTAAATGTC
GATGGATCAATTGCATATGTTCCACAAATGGCATGGATTCAAAATGCAACATTGCAAGAT
AATATTTTATTTGGGAAACCATTGAATAAAGATTTTTATCAAAAAGTTATTCATGCATGT
GCATTAACTGCAGATCTTGCAATGCTTCCTGGCGGCGATCAAACTGAAATTGGTGAAAAA
GGAATAAATTTGTCAGGAGGACAGAAGCAAAGAGTTTCATTAGCAAGAGCAGTTTATAGT
CAAGCACAAATTTATATTTTTGATGATCCTCTTAGTGCAGTAGATTCACATGTGGGCAAG
CACATTTTTGATAATGTTTTAAGTGAAAATGGAATGCTTCAAGGCAAAACGAGGCTTCTT
GTCACTCACGCAATTTCTTATTTGCCAAAGGTCGATGAAATTCTCGTTATGACAAATGGT
GAGATAAGTGAGAGTGGCTCTTATAAAATCTTACTTGCACAGAAGGGAGCCTTCTCAGAG
TTTCTTATTCAATATTTGCAAGAACATCCTGATGATGAAGACATCAATGAGCTTGATGTA
GAAAATGAAGACATTCGATTGATGTTGAAACGATCGATATCAGAAGTATCGAGGCAAAGC
GGTTCAAGGTCATCATATAAGAGGCATGATAGCGTAAATTCAGGCACGCACAAAGATGTA
GAGGAAAAGAAAAATGAAGAGAAGGAAGAAGATGTTGATAAGCTCATTGAAGCTGAAAAT
GCGGCTGTTGGAAATGTTTCAACTGACGTTTATTTACGATACTTTAAAAGCGTTGGATTA
AAGTTGATTATTGCTATTTTGTTGTTTGTATTTTGCAGTGAAACTTCATCTGTTCTTTCA
AATTTTTGGATAGTTCGATGGACAATTGACACAAGAACAGAATCAGAAGATGCAAATTTT
TGGAGAAATTTTTATGTTGGAATTTATGGTGCACTTGGAACGTTGCTATCACTTACATAT
TTTGCAGCTGCAATGACATTTGCGTATGGTGCTGTAAGAGCAGCTAGAAATCTTCACAGT
AGACTTTTCTACAATGTTCTACGATTACCAATGTCATTTTTTGATACAACACCTTTAGGT
AGAATAGTGAATCGTTTTTCACGTGATACGGATATGATTGATGCTTATCTGCCATTTATG
ATGTTCAGTTGGACTGGAATGCTTTTCAGTTGTATTGGAACAATCATTGTAATTTCTTAT
TCTACTCCTTGGTTTTTGATTGTGGTTGTGCCGCTTGTTGCTGGTTATTATTTTATACAA
AGATTTTATATTAAAACATCAAGACAACTTAAAAGAATTGAATCAATTACAAGATCACCA
GTTTATTCACATTTTGGCGAATCAGTGAGCGGACAATCAGTTATTAGAGCATATAAGGAA
GAAAATAGATTCAAGGTTGAATCAGAAACTAGAGTTGATCATAATCAATCAATTGCTTAT
CAAACTATTATCGCTGATCTTTGGCTTGGCGTTCGTTTAGAGATTGTCGGAGCATTCATT
GTGCTTTTTGCATGTCTTTTTGCAATCTTGGCAAGATATGATATTGAAGAAGCAACAGTT
GGACTTTCTATTTCATATGCATTACAAATTTCAGCTGTTTTAAGTTATTTTGTATTTATT
GCGACTGAAGTAGAAAGCAATATTGTATCAATAGAGCGTGTTGAAGAATATGCAGATTTG
CCACAAGAAGCAGCATGGAAAACAAATGAAATCGATACAGAATGGCCACAACAAGGAATT
ATTGAGTTTAAAGATTTTCAAGTGCGCTATCGTGAAGGACTTGATTTAGTTCTTAAAGGT
TTAAATTTTAAATGCAATAGCAGTGAAAAAATTGGAATTGTAGGCAGAACCGGAGCAGGA
AAATCAAGCATGACATTATCACTATTTAGAATAATTGAAGCTGCTAGTGGAAAAATAATA
ATTGATGGAATTGACATTTCTGAAATTGGATTGCATTCACTTCGTTCAAGATTAACAATT
ATTCCTCAAGATTCAATTCTTTTCAGTGGCACTCTTCGCATGAACATCGACCCATTCAAT
AGCTTTTCAGACGACGCTGTTTGGATGGCACTTGAGCATTCTCATTTGAAAGCATTTGTT
AAATCATTGCCAGATGGACTAAGTTATATTGTGTCTGAAGGTGGTGAAAATCTTTCTGTT
GGTCAACGACAGCTTGTTTGTTTAGCGCGTGCATTGTTAAGAAAAACTCGAGTATTAATT
TTAGATGAAGCAACAGCTGCCATAGATATTGAAACAGATGAATTAATACAAAAAACTATA
AGAATGCAATTTAATGATTGTACAATTTTAACAATTGCTCATAGATTAAATACAATTATG
GATAGTGATAGAATAATTGTTTTAGATAAAGGTGAAATTGCAGAATTTGATTCACCTGAT
GCTCTACTAAGCAATAGAAATTCAATATTTTATGGAATGGCACGAGATGCAGGACTAGTC
AACGATGAATTAACACAAATGAACTGA

>g1350.t1 Gene=g1350 Length=1508
MNAEFCGSEFWDSDLSWRPENPDFTFCFKNSVLIWVPCAFLFIFSPLDFYRHYNSRYSNI
PASFLNITKFCIMGFLILLTIADLTMMVLLRANKHEETIFGVQFVSTGLKILTFILAVIL
QQFHLKKGHRSSIFLFIFWLVLTICAIPQLRWEVREFNVDFNNTARLWASYHCISFIIFF
SCASIMTVLCAFSDKEPRVSTYPKYANPSPELSVGSLNQLLYQWFTSTAWKGFKNPLTEE
DIYDINPQFATSELTPKFDKYFQESIERNKKKSKPLASKQTTEEEDEEFSEQATNGSVMG
ALWHAFGGKMIFSLFLRIITDLLQFAQPFLLGTLIDYIATDGALWKGLFLTFTFFSISLI
SAILNNYQMMLAFHVGFKVRTSLISAVYRKALKISSSVKKNATIGQIVNLMAVDAHRFYD
TSPYILYGLTAPMIMALALYFLWEVIGVSAFAGLAVLIIIFPISGVVANEMQKVQHKQMS
IKDERVKKISEILGGIKVIKFYAWEQSFQEQISETRNQELKYLRKNAMLNASTEFLWTLA
PFFVSFATFTTYVMLGNVLRADVAFVAIVLFNILRLPITMLPMTINSIMMAIVSAKRITK
FMNSKEIDPNNVSHNPSEFAIEFNNATFSWDGNEKILKNINLKVPKGSLTAVVGQVASGK
SSLISALLGDMEKLEGTVNVDGSIAYVPQMAWIQNATLQDNILFGKPLNKDFYQKVIHAC
ALTADLAMLPGGDQTEIGEKGINLSGGQKQRVSLARAVYSQAQIYIFDDPLSAVDSHVGK
HIFDNVLSENGMLQGKTRLLVTHAISYLPKVDEILVMTNGEISESGSYKILLAQKGAFSE
FLIQYLQEHPDDEDINELDVENEDIRLMLKRSISEVSRQSGSRSSYKRHDSVNSGTHKDV
EEKKNEEKEEDVDKLIEAENAAVGNVSTDVYLRYFKSVGLKLIIAILLFVFCSETSSVLS
NFWIVRWTIDTRTESEDANFWRNFYVGIYGALGTLLSLTYFAAAMTFAYGAVRAARNLHS
RLFYNVLRLPMSFFDTTPLGRIVNRFSRDTDMIDAYLPFMMFSWTGMLFSCIGTIIVISY
STPWFLIVVVPLVAGYYFIQRFYIKTSRQLKRIESITRSPVYSHFGESVSGQSVIRAYKE
ENRFKVESETRVDHNQSIAYQTIIADLWLGVRLEIVGAFIVLFACLFAILARYDIEEATV
GLSISYALQISAVLSYFVFIATEVESNIVSIERVEEYADLPQEAAWKTNEIDTEWPQQGI
IEFKDFQVRYREGLDLVLKGLNFKCNSSEKIGIVGRTGAGKSSMTLSLFRIIEAASGKII
IDGIDISEIGLHSLRSRLTIIPQDSILFSGTLRMNIDPFNSFSDDAVWMALEHSHLKAFV
KSLPDGLSYIVSEGGENLSVGQRQLVCLARALLRKTRVLILDEATAAIDIETDELIQKTI
RMQFNDCTILTIAHRLNTIMDSDRIIVLDKGEIAEFDSPDALLSNRNSIFYGMARDAGLV
NDELTQMN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
54 g1350.t1 CDD cd18595 ABC_6TM_MRP1_2_3_6_D1_like 312 598 1.15292E-124
52 g1350.t1 CDD cd03250 ABCC_MRP_domain1 621 821 8.47562E-118
53 g1350.t1 CDD cd18603 ABC_6TM_MRP1_2_3_6_D2_like 943 1238 1.02231E-139
51 g1350.t1 CDD cd03244 ABCC_MRP_domain2 1259 1479 4.9375E-122
15 g1350.t1 Coils Coil Coil 898 918 -
13 g1350.t1 Gene3D G3DSA:1.20.1560.10 - 276 609 1.3E-26
12 g1350.t1 Gene3D G3DSA:3.40.50.300 - 619 850 6.9E-73
14 g1350.t1 Gene3D G3DSA:1.20.1560.10 - 907 1244 6.3E-49
11 g1350.t1 Gene3D G3DSA:3.40.50.300 - 1245 1494 3.9E-85
77 g1350.t1 MobiDBLite mobidb-lite consensus disorder prediction 272 291 -
78 g1350.t1 MobiDBLite mobidb-lite consensus disorder prediction 878 911 -
76 g1350.t1 MobiDBLite mobidb-lite consensus disorder prediction 882 911 -
5 g1350.t1 PANTHER PTHR24223 ATP-BINDING CASSETTE SUB-FAMILY C 75 1499 0.0
6 g1350.t1 PANTHER PTHR24223:SF405 CANALICULAR MULTISPECIFIC ORGANIC ANION TRANSPORTER 2 75 1499 0.0
2 g1350.t1 Pfam PF00664 ABC transporter transmembrane region 310 576 5.0E-30
4 g1350.t1 Pfam PF00005 ABC transporter 637 771 1.3E-19
1 g1350.t1 Pfam PF00664 ABC transporter transmembrane region 943 1211 7.7E-42
3 g1350.t1 Pfam PF00005 ABC transporter 1278 1426 3.2E-27
30 g1350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 31 -
48 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 50 -
22 g1350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 51 69 -
38 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 70 92 -
26 g1350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 93 97 -
46 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 98 120 -
23 g1350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 121 131 -
50 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 132 149 -
29 g1350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 150 168 -
43 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 169 192 -
17 g1350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 193 313 -
36 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 314 338 -
25 g1350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 339 343 -
35 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 344 364 -
20 g1350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 365 423 -
41 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 424 443 -
33 g1350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 444 448 -
44 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 449 469 -
19 g1350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 470 534 -
39 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 535 555 -
32 g1350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 556 566 -
34 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 567 593 -
24 g1350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 594 941 -
45 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 942 964 -
27 g1350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 965 983 -
37 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 984 1012 -
21 g1350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1013 1054 -
40 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1055 1078 -
28 g1350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1079 1083 -
42 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1084 1104 -
16 g1350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1105 1174 -
49 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1175 1193 -
31 g1350.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1194 1198 -
47 g1350.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1199 1221 -
18 g1350.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1222 1508 -
74 g1350.t1 ProSitePatterns PS00211 ABC transporters family signature. 744 758 -
75 g1350.t1 ProSitePatterns PS00211 ABC transporters family signature. 1398 1412 -
81 g1350.t1 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 311 590 38.564
83 g1350.t1 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 621 844 22.823
80 g1350.t1 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 944 1226 38.644
82 g1350.t1 ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 1261 1495 18.241
72 g1350.t1 SMART SM00382 AAA_5 646 821 1.8E-4
73 g1350.t1 SMART SM00382 AAA_5 1287 1472 9.2E-14
7 g1350.t1 SUPERFAMILY SSF90123 ABC transporter transmembrane region 306 608 1.57E-41
10 g1350.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 610 842 8.76E-59
8 g1350.t1 SUPERFAMILY SSF90123 ABC transporter transmembrane region 932 1243 7.46E-57
9 g1350.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1253 1493 3.35E-72
79 g1350.t1 TIGRFAM TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP) 7 1499 0.0
65 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 31 50 -
58 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 62 84 -
70 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 99 120 -
56 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 133 152 -
62 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 167 189 -
61 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 342 364 -
63 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 421 443 -
64 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 445 467 -
66 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 537 559 -
71 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 571 593 -
60 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 942 964 -
59 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 985 1007 -
57 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1022 1044 -
67 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1056 1078 -
68 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1082 1104 -
69 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1168 1190 -
55 g1350.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1200 1222 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016021 integral component of membrane CC
GO:0022857 transmembrane transporter activity MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values