General information for g13509.t24
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phospholipid hydroperoxide glutathione peroxidase.
Parent gene
- The parent gene g13509 is located on chr_1: 30583916..30584496 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13509 | g13509.t24 | TSS | g13509.t24 | 30579763 | 30579763 |
| chr_1 | g13509 | g13509.t24 | isoform | g13509.t24 | 30579949 | 30583477 |
| chr_1 | g13509 | g13509.t24 | exon | g13509.t24.exon1 | 30579949 | 30579979 |
| chr_1 | g13509 | g13509.t24 | cds | g13509.t24.CDS1 | 30579955 | 30579979 |
| chr_1 | g13509 | g13509.t24 | exon | g13509.t24.exon2 | 30582937 | 30583477 |
| chr_1 | g13509 | g13509.t24 | cds | g13509.t24.CDS2 | 30582937 | 30583241 |
| chr_1 | g13509 | g13509.t24 | TTS | g13509.t24 | 30584495 | 30584495 |
Sequences
>g13509.t24 Gene=g13509 Length=572
TCTACGATGAATATGCCGAATCAAAGGGTAAGTTTACGTATTCTTGCATTCCCATGTAGT
CAATTTAGCATAGGAGAAGCTACTCCTGATGAACTTCAGGGATGTATAAAGGCTCATAAC
GTTAAATTTGATGTTTTTGAACATGTTAAAGTTAATGGCGATGATGCTCATCCATTATGG
CAGTATTTGAAAAAACAACAAGGTGGAACAATTATTGATGCAATTAAATGGGATTATACT
AAATTTATTGTTGACAAAAATGGCGTACCAGTTGACCGTTTTGCTCCAACTACTGATCCA
TTAGAAATGATTGCAGATCTTAAGAAATACTTGTAAAGAGTAGATTTTTATATTGCAAAC
TCTGCCTTATTTTACGAGTTACTTTAAATTTTTCATTCATCTTGAAAAAATAATAGTTGT
TTAAGATCATCATTCCAGTTATTTATAACGACGTTGACGGTTGAATTTTATATTAATTAA
CTTGGCATATGACGACAAATTTTTATACTCTTTATCTCTCTTACATGTAATGAAATATTC
TCAAAATTTCTATAAATAATCCTTTTATTCTC
>g13509.t24 Gene=g13509 Length=109
MNMPNQRVSLRILAFPCSQFSIGEATPDELQGCIKAHNVKFDVFEHVKVNGDDAHPLWQY
LKKQQGGTIIDAIKWDYTKFIVDKNGVPVDRFAPTTDPLEMIADLKKYL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13509.t24 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 3 | 109 | 0.00 |
| 2 | g13509.t24 | PANTHER | PTHR11592:SF121 | GLUTATHIONE PEROXIDASE | 9 | 109 | 0.00 |
| 3 | g13509.t24 | PANTHER | PTHR11592 | GLUTATHIONE PEROXIDASE | 9 | 109 | 0.00 |
| 7 | g13509.t24 | PIRSF | PIRSF000303 | Glutathion_perox | 5 | 109 | 0.00 |
| 1 | g13509.t24 | Pfam | PF00255 | Glutathione peroxidase | 7 | 62 | 0.00 |
| 6 | g13509.t24 | ProSiteProfiles | PS51355 | Glutathione peroxidase profile. | 1 | 109 | 34.21 |
| 4 | g13509.t24 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 10 | 109 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0004602 | glutathione peroxidase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed