General information for g13568.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein 60A.
Parent gene
- The parent gene g13568 is located on chr_1: 30962254..30963160 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13568 | g13568.t3 | TTS | g13568.t3 | 30959821 | 30959821 |
| chr_1 | g13568 | g13568.t3 | isoform | g13568.t3 | 30960024 | 30961419 |
| chr_1 | g13568 | g13568.t3 | exon | g13568.t3.exon1 | 30960024 | 30961419 |
| chr_1 | g13568 | g13568.t3 | cds | g13568.t3.CDS1 | 30960718 | 30961050 |
| chr_1 | g13568 | g13568.t3 | TSS | g13568.t3 | NA | NA |
Sequences
>g13568.t3 Gene=g13568 Length=1396
ATCATCATGTTCCTGAAATGAGGCATACACATGGTAGAAGATTGTGGTTTGATATATCTG
AAATTGCTAATGATGTTTCACTATTGATGGCTGAATTGAGATTATATCAAAATTCTGTAT
TTAGCAAATATGAGGAAGAAAAGCAAGTTTGTGTGAGAGTTTATAAAGCTGATATAAGAA
ATGAGTGAGTATAAATTTACTCTATTAAAGTCTACTAAAAATTAAATTTATATGTTACAA
TTAAAATTCTCTGAAAATTCTATAAAAAGAACTACAATCTCGACATTCAATCTCTTTTGC
GGATTCTCAATTACAGAATTCCTCATAATTCATACAAATTGATTTAACATTAATATCATT
TTTCATTTTATGTACATTTATTTATTTTTCAACAGCCACGAAGACTTAAAACTGCTCTCA
TTTGTGAACACAACCACGCACACTGACGGTTGGCTTGAGTTAAATGTTACACTCGCATTA
AAAGAGTGGATTGAGCAAAGTGCAAGTAATATGGGATTTGTGATAAAAGCAAATTTAATT
GAAAGACCAGATAAAGATTTAAGGCTTGATGATATTGGACTTGTCAGCTCACGTGGTGAT
GATGAATTTCAACCTTTTATGGTTGGATTTTTCAAAGGACAAGAAGTAAGAAAAAATTCA
CTGAGAAAAAATTTTTTTAACAAGCAAAGTGTTCTCTCATAAAACGAATTTATAAGGCAT
TAAAAGCTAAAATTCATAAAGTTAAAATAGTTTTATGAGGCATAAAAAGTTTGTATGGGA
AATATTTTTTGATTGTTATGAAGTCACTTTATGAGAGCAAATTTTATGCCAGTTTTAAAG
TTTTTTATCAGTGTTTGTTAAAAAGTTAGTTATTTTTAAATGGAAATTTTTTAGATGATA
AAACCGAAGAAAACAACAAAACATCATCACACAAGAACAAAGAGACAAGCAAATCACAGA
ACTAAAAGCAAAAGAAAGTCAGATAATCGAAATCCATTTCTATCGCCGGGTGAAAACAAT
CCAAAATCGTGCCAGATTAAAAATCTCTATGTGAGTTTCAAGGACTTAAAATGGCAAGAC
TGGATCATTGCACCAGATGGATATGGAGCTTTTTATTGCGATGGCGAATGTAATTTTCCA
CTTAACGCCCATATGAACGCAAGTAATCATGCAATTGTTCAAACACTAGTTCATCTAATG
CATCCGACAAAGGTAAAATTTTTAAAATTTTTATTTCTCTTTTATTAAAAAAGATTTATT
TTCTTTTCAGGTGCCAAAACCATGTTGTGCACCAACAAAATTAAGTGCGATATCTGTTCT
TTACTATCTTGATGATTCAAACGTAAATTTGAAAAAATACAAAAATATGGTTGTAAAAAG
TTGCGGATGCCATTAA
>g13568.t3 Gene=g13568 Length=110
MYIYLFFNSHEDLKLLSFVNTTTHTDGWLELNVTLALKEWIEQSASNMGFVIKANLIERP
DKDLRLDDIGLVSSRGDDEFQPFMVGFFKGQEVRKNSLRKNFFNKQSVLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g13568.t3 | Gene3D | G3DSA:2.60.120.970 | - | 3 | 85 | 3.5e-05 |
| 1 | g13568.t3 | Pfam | PF00688 | TGF-beta propeptide | 8 | 87 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
