General information for g13568.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein 60A.
Parent gene
- The parent gene g13568 is located on chr_1: 30962254..30963160 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13568 | g13568.t5 | TTS | g13568.t5 | 30959821 | 30959821 |
| chr_1 | g13568 | g13568.t5 | isoform | g13568.t5 | 30960024 | 30962254 |
| chr_1 | g13568 | g13568.t5 | exon | g13568.t5.exon1 | 30960024 | 30960149 |
| chr_1 | g13568 | g13568.t5 | exon | g13568.t5.exon2 | 30960208 | 30960550 |
| chr_1 | g13568 | g13568.t5 | cds | g13568.t5.CDS1 | 30960455 | 30960550 |
| chr_1 | g13568 | g13568.t5 | exon | g13568.t5.exon3 | 30960775 | 30961024 |
| chr_1 | g13568 | g13568.t5 | cds | g13568.t5.CDS2 | 30960775 | 30961024 |
| chr_1 | g13568 | g13568.t5 | exon | g13568.t5.exon4 | 30961236 | 30961419 |
| chr_1 | g13568 | g13568.t5 | cds | g13568.t5.CDS3 | 30961236 | 30961419 |
| chr_1 | g13568 | g13568.t5 | exon | g13568.t5.exon5 | 30961747 | 30961922 |
| chr_1 | g13568 | g13568.t5 | cds | g13568.t5.CDS4 | 30961747 | 30961922 |
| chr_1 | g13568 | g13568.t5 | exon | g13568.t5.exon6 | 30962028 | 30962254 |
| chr_1 | g13568 | g13568.t5 | cds | g13568.t5.CDS5 | 30962028 | 30962254 |
| chr_1 | g13568 | g13568.t5 | TSS | g13568.t5 | 30962679 | 30962679 |
Sequences
>g13568.t5 Gene=g13568 Length=1306
ATGGCACAAAATAATCTGCGAAATATTATACTTGTGAATTTTATGGTGCTTATTTTTATT
TATTGTGTTTATGCATCATATTCGGGTATTTATGTTGATGATGGACAACAGACAATATTA
CATCACCAATTAACGAGAGATGAAACGCATGAAGTGGAACATGAGATTCTGGAGTTATTG
GGACTGCCGGATAGACCGCGTAAGCGGCACATACATCCATCACTAAGAAAATCAGCGCCA
CAATTTCTACTAGATATTTATAAGAAATTAACATTGGAACAAGAAGATGACAATACAAGT
ACGAGAGTTAAACGCGATGCCAGTGACAATGAAATTTATTTAAGCGAAGCTGATCAATAT
GCAATCGATCAAGCTGATATTATCATGACTTTTCTTAATAAAAATCATCATGTTCCTGAA
ATGAGGCATACACATGGTAGAAGATTGTGGTTTGATATATCTGAAATTGCTAATGATGTT
TCACTATTGATGGCTGAATTGAGATTATATCAAAATTCTGTATTTAGCAAATATGAGGAA
GAAAAGCAAGTTTGTGTGAGAGTTTATAAAGCTGATATAAGAAATGACCACGAAGACTTA
AAACTGCTCTCATTTGTGAACACAACCACGCACACTGACGGTTGGCTTGAGTTAAATGTT
ACACTCGCATTAAAAGAGTGGATTGAGCAAAGTGCAAGTAATATGGGATTTGTGATAAAA
GCAAATTTAATTGAAAGACCAGATAAAGATTTAAGGCTTGATGATATTGGACTTGTCAGC
TCACGTGGTGATGATGAATTTCAACCTTTTATGGTTGGATTTTTCAAAGGACAAGAATTA
TTTTTAAATGGAAATTTTTTAGATGATAAAACCGAAGAAAACAACAAAACATCATCACAC
AAGAACAAAGAGACAAGCAAATCACAGAACTAAAAGCAAAAGAAAGTCAGATAATCGAAA
TCCATTTCTATCGCCGGGTGAAAACAATCCAAAATCGTGCCAGATTAAAAATCTCTATGT
GAGTTTCAAGGACTTAAAATGGCAAGACTGGATCATTGCACCAGATGGATATGGAGCTTT
TTATTGCGATGGCGAATGTAATTTTCCACTTAACGCCCATATGAACGCAAGTAATCATGC
AATTGTTCAAACACTAGTTCATCTAATGCATCCGACAAAGGTGCCAAAACCATGTTGTGC
ACCAACAAAATTAAGTGCGATATCTGTTCTTTACTATCTTGATGATTCAAACGTAAATTT
GAAAAAATACAAAAATATGGTTGTAAAAAGTTGCGGATGCCATTAA
>g13568.t5 Gene=g13568 Length=310
MAQNNLRNIILVNFMVLIFIYCVYASYSGIYVDDGQQTILHHQLTRDETHEVEHEILELL
GLPDRPRKRHIHPSLRKSAPQFLLDIYKKLTLEQEDDNTSTRVKRDASDNEIYLSEADQY
AIDQADIIMTFLNKNHHVPEMRHTHGRRLWFDISEIANDVSLLMAELRLYQNSVFSKYEE
EKQVCVRVYKADIRNDHEDLKLLSFVNTTTHTDGWLELNVTLALKEWIEQSASNMGFVIK
ANLIERPDKDLRLDDIGLVSSRGDDEFQPFMVGFFKGQELFLNGNFLDDKTEENNKTSSH
KNKETSKSQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13568.t5 | Gene3D | G3DSA:2.60.120.970 | - | 41 | 272 | 9.3E-14 |
| 5 | g13568.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 310 | - |
| 2 | g13568.t5 | PANTHER | PTHR11848:SF135 | BONE MORPHOGENETIC PROTEIN 7 | 10 | 306 | 7.4E-33 |
| 3 | g13568.t5 | PANTHER | PTHR11848 | TGF-BETA FAMILY | 10 | 306 | 7.4E-33 |
| 1 | g13568.t5 | Pfam | PF00688 | TGF-beta propeptide | 36 | 274 | 5.8E-64 |
| 7 | g13568.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 8 | - |
| 9 | g13568.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 9 | 27 | - |
| 8 | g13568.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 28 | 310 | - |
| 4 | g13568.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 9 | 31 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
