General information for g13574.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13574 is located on chr_1: 30998245..30999102 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13574 | g13574.t1 | isoform | g13574.t1 | 30998245 | 30999102 |
| chr_1 | g13574 | g13574.t1 | exon | g13574.t1.exon1 | 30998245 | 30999102 |
| chr_1 | g13574 | g13574.t1 | cds | g13574.t1.CDS1 | 30998245 | 30999102 |
| chr_1 | g13574 | g13574.t1 | TSS | g13574.t1 | NA | NA |
| chr_1 | g13574 | g13574.t1 | TTS | g13574.t1 | NA | NA |
Sequences
>g13574.t1 Gene=g13574 Length=858
ATGGGAACAGTTTTAAGCTTTAGTCCACGCGAAAGGCGTCCTATATATTCGTCAACAACT
CATCATCATGGTAGTGGCACAATAAGCACCTCCAATTCAACATCGGATTTTCAGCTCAAT
AATTATGCATATGAGCAAATCAATAATGCAAAAAATCGCGAAAACTCAAAGCCAATGCAG
TACTTGAGTGTGCCAAATCAATTTCAATTGCAAAATGGCAACAGTTCAATGATATATGGC
AGTGCAAATTCAAATATTGTGAATAATAATTTGACATCATCCGCGGTAAACGGTGTTGTT
GCTTTGGACGATAGACAGTCTGATAGTGCGCGAATACTTTCAGAAAAGAATGCAATTGAA
AAAAACCTTAAAAAGCACTCGCTATTCATTAATGCATTGTCATGGAAGCGATTGTCGTCG
TCACACGGTAAAAAGAAACTTGATAATGCAAAAAGCAAATCGGCAAACATTACTAGTGGC
ACTTTTCGACCACCAACTTTAACTGACACTGTACATCCAATGGTGGTTGTTAATGACACG
AAAAAATATCCACAACAACAAGTTCAGCTTATAGCTAACAACAGCCATCAACAGCCATCG
ACAAACTATTTCACACAGAATGACCACAAAAATTTGCTCGCCCTCGACTTGCAGAATGCC
AATTTGCAGAATCATCATCATAATGTTGAGAAGGTGATACCTAAAATGTCCATTCCAAAT
CGTTCCGTTCAATTCTCAAATGGCTGTAATGTTGAACAACAACAAACATCACAAGCAGCA
CCGAGAAAAACTATAATTCAGGTGAGTTGGATTTTTTATTTAACGATTGTCTATATTTTA
CCATGCTTTCGAAATTGA
>g13574.t1 Gene=g13574 Length=285
MGTVLSFSPRERRPIYSSTTHHHGSGTISTSNSTSDFQLNNYAYEQINNAKNRENSKPMQ
YLSVPNQFQLQNGNSSMIYGSANSNIVNNNLTSSAVNGVVALDDRQSDSARILSEKNAIE
KNLKKHSLFINALSWKRLSSSHGKKKLDNAKSKSANITSGTFRPPTLTDTVHPMVVVNDT
KKYPQQQVQLIANNSHQQPSTNYFTQNDHKNLLALDLQNANLQNHHHNVEKVIPKMSIPN
RSVQFSNGCNVEQQQTSQAAPRKTIIQVSWIFYLTIVYILPCFRN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g13574.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - |
| 1 | g13574.t1 | Pfam | PF03261 | Cyclin-dependent kinase 5 activator protein | 91 | 269 | 7.7E-19 |
| 4 | g13574.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 263 | - |
| 5 | g13574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 264 | 283 | - |
| 3 | g13574.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 284 | 285 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016533 | protein kinase 5 complex | CC |
| GO:0061575 | cyclin-dependent protein serine/threonine kinase activator activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed