General information for g13580.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cytochrome P450 9e2.
Parent gene
- The parent gene g13580 is located on chr_1: 31042311..31047040 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13580 | g13580.t10 | TSS | g13580.t10 | 31040681 | 31040681 |
| chr_1 | g13580 | g13580.t10 | isoform | g13580.t10 | 31040873 | 31041761 |
| chr_1 | g13580 | g13580.t10 | exon | g13580.t10.exon1 | 31040873 | 31041072 |
| chr_1 | g13580 | g13580.t10 | cds | g13580.t10.CDS1 | 31040873 | 31041072 |
| chr_1 | g13580 | g13580.t10 | exon | g13580.t10.exon2 | 31041192 | 31041391 |
| chr_1 | g13580 | g13580.t10 | cds | g13580.t10.CDS2 | 31041192 | 31041391 |
| chr_1 | g13580 | g13580.t10 | exon | g13580.t10.exon3 | 31041615 | 31041761 |
| chr_1 | g13580 | g13580.t10 | cds | g13580.t10.CDS3 | 31041615 | 31041760 |
| chr_1 | g13580 | g13580.t10 | TTS | g13580.t10 | NA | NA |
Sequences
>g13580.t10 Gene=g13580 Length=547
ATGTTTATATGGTTTTTATTAATTGTGGCACTTGTTGCTTTGTATAAATATGGCACACGT
AATTTTGATTATTTCCGAGCTAAAGGTGTGCCTTTTAATAAACCAAGATTCTTTGTTGGA
AGTAGATTAGGAATGGTTTTAAAAACAAGCAATATGATTGAATTTGTTGAAGAAATTTAC
AATGAATTTAGAAATGAAAAAGTATCAGGAATGTTTGAATTTAATCACCCGGCATTTTTC
ATTCGTGACCCTGAACTCATTAAAAAATTGGCAGTTAAAGAATTTGATTCATTTATGGAT
CATCGTCTTGTTTTATCAGAAGATGCAGAACCATTATTCGCCAAAGCTCTTTTTGGTTTG
ACTGGTCAAAAATGGAAAGGTAAAAAAAATATTTCATTATGCTCGAAGATGCGCTTAATG
TTCAAATTGATGAATGAAGTGGGATCGAAAATGTCGAAGACTGTTTGTGATAAAATCAAT
AAAGGCGCAGACAATAAAGTTGAATTTAAAGAGTTCTCGAGAAAATTCACGATTGATATA
ATAGCAA
>g13580.t10 Gene=g13580 Length=182
MFIWFLLIVALVALYKYGTRNFDYFRAKGVPFNKPRFFVGSRLGMVLKTSNMIEFVEEIY
NEFRNEKVSGMFEFNHPAFFIRDPELIKKLAVKEFDSFMDHRLVLSEDAEPLFAKALFGL
TGQKWKGKKNISLCSKMRLMFKLMNEVGSKMSKTVCDKINKGADNKVEFKEFSRKFTIDI
IA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13580.t10 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 13 | 182 | 2.9E-21 |
| 1 | g13580.t10 | PANTHER | PTHR24292 | CYTOCHROME P450 | 2 | 182 | 2.1E-31 |
| 6 | g13580.t10 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 7 | g13580.t10 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 8 | g13580.t10 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 14 | - |
| 9 | g13580.t10 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 18 | - |
| 5 | g13580.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 182 | - |
| 2 | g13580.t10 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 22 | 182 | 3.61E-12 |
| 3 | g13580.t10 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed