Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13580 g13580.t11 TSS g13580.t11 31040681 31040681
chr_1 g13580 g13580.t11 isoform g13580.t11 31040873 31041761
chr_1 g13580 g13580.t11 exon g13580.t11.exon1 31040873 31041072
chr_1 g13580 g13580.t11 cds g13580.t11.CDS1 31040873 31041072
chr_1 g13580 g13580.t11 exon g13580.t11.exon2 31041192 31041370
chr_1 g13580 g13580.t11 cds g13580.t11.CDS2 31041192 31041370
chr_1 g13580 g13580.t11 exon g13580.t11.exon3 31041434 31041761
chr_1 g13580 g13580.t11 cds g13580.t11.CDS3 31041434 31041498
chr_1 g13580 g13580.t11 TTS g13580.t11 NA NA

Sequences

>g13580.t11 Gene=g13580 Length=707
ATGTTTATATGGTTTTTATTAATTGTGGCACTTGTTGCTTTGTATAAATATGGCACACGT
AATTTTGATTATTTCCGAGCTAAAGGTGTGCCTTTTAATAAACCAAGATTCTTTGTTGGA
AGTAGATTAGGAATGGTTTTAAAAACAAGCAATATGATTGAATTTGTTGAAGAAATTTAC
AATGAATTTAGAAATGAAAAAGTATCAGGAATGTTTGAATTTAATCACCCGGCATTTTTC
ATTCGTGACCCTGAACTCATTAAAAAATTGGCAGTTAAAGAATTTGATTCATTTATGGAT
CATCGTCTTGTTTTATCAGAAGATGCAGAACCATTATTCGCCAAAGCTCTTTTTGGTTTG
ACTGGTCAAAAATGGAAAGATATGAGAGCTACATTGTCTCCTGCATTCACTGGTATGAAA
TATGATCACATCAAAAAGTTTTAAAAAAACTTCTATGCGTAAAAATTTAACCTTGAAGAT
AATTAAAGTCATAAAAACCGGTTTTTCATTCTAATGATTTTTCTCAGACGCTAATGACTT
TCCTAATTTAAACTAAACAGGCTCGAAGATGCGCTTAATGTTCAAATTGATGAATGAAGT
GGGATCGAAAATGTCGAAGACTGTTTGTGATAAAATCAATAAAGGCGCAGACAATAAAGT
TGAATTTAAAGAGTTCTCGAGAAAATTCACGATTGATATAATAGCAA

>g13580.t11 Gene=g13580 Length=147
MFIWFLLIVALVALYKYGTRNFDYFRAKGVPFNKPRFFVGSRLGMVLKTSNMIEFVEEIY
NEFRNEKVSGMFEFNHPAFFIRDPELIKKLAVKEFDSFMDHRLVLSEDAEPLFAKALFGL
TGQKWKDMRATLSPAFTGMKYDHIKKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g13580.t11 Gene3D G3DSA:1.10.630.10 Cytochrome p450 13 147 2.1E-20
2 g13580.t11 PANTHER PTHR24292 CYTOCHROME P450 11 141 6.4E-33
3 g13580.t11 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 11 141 6.4E-33
1 g13580.t11 Pfam PF00067 Cytochrome P450 35 140 5.5E-6
8 g13580.t11 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
9 g13580.t11 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
10 g13580.t11 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
11 g13580.t11 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
7 g13580.t11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 147 -
4 g13580.t11 SUPERFAMILY SSF48264 Cytochrome P450 22 141 5.37E-13
5 g13580.t11 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values