Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13580 g13580.t13 TSS g13580.t13 31040681 31040681
chr_1 g13580 g13580.t13 isoform g13580.t13 31040873 31041879
chr_1 g13580 g13580.t13 exon g13580.t13.exon1 31040873 31041072
chr_1 g13580 g13580.t13 cds g13580.t13.CDS1 31040873 31041072
chr_1 g13580 g13580.t13 exon g13580.t13.exon2 31041192 31041391
chr_1 g13580 g13580.t13 cds g13580.t13.CDS2 31041192 31041391
chr_1 g13580 g13580.t13 exon g13580.t13.exon3 31041615 31041781
chr_1 g13580 g13580.t13 cds g13580.t13.CDS3 31041615 31041781
chr_1 g13580 g13580.t13 exon g13580.t13.exon4 31041837 31041879
chr_1 g13580 g13580.t13 cds g13580.t13.CDS4 31041837 31041878
chr_1 g13580 g13580.t13 TTS g13580.t13 NA NA

Sequences

>g13580.t13 Gene=g13580 Length=610
ATGTTTATATGGTTTTTATTAATTGTGGCACTTGTTGCTTTGTATAAATATGGCACACGT
AATTTTGATTATTTCCGAGCTAAAGGTGTGCCTTTTAATAAACCAAGATTCTTTGTTGGA
AGTAGATTAGGAATGGTTTTAAAAACAAGCAATATGATTGAATTTGTTGAAGAAATTTAC
AATGAATTTAGAAATGAAAAAGTATCAGGAATGTTTGAATTTAATCACCCGGCATTTTTC
ATTCGTGACCCTGAACTCATTAAAAAATTGGCAGTTAAAGAATTTGATTCATTTATGGAT
CATCGTCTTGTTTTATCAGAAGATGCAGAACCATTATTCGCCAAAGCTCTTTTTGGTTTG
ACTGGTCAAAAATGGAAAGGTAAAAAAAATATTTCATTATGCTCGAAGATGCGCTTAATG
TTCAAATTGATGAATGAAGTGGGATCGAAAATGTCGAAGACTGTTTGTGATAAAATCAAT
AAAGGCGCAGACAATAAAGTTGAATTTAAAGAGTTCTCGAGAAAATTCACGATTGATATA
ATAGCAACTTGTGCATTTGGCATTGAAGTTAATTCATTTGAAAATGCAAATAATGACTTC
ATGAGAATTG

>g13580.t13 Gene=g13580 Length=203
MFIWFLLIVALVALYKYGTRNFDYFRAKGVPFNKPRFFVGSRLGMVLKTSNMIEFVEEIY
NEFRNEKVSGMFEFNHPAFFIRDPELIKKLAVKEFDSFMDHRLVLSEDAEPLFAKALFGL
TGQKWKGKKNISLCSKMRLMFKLMNEVGSKMSKTVCDKINKGADNKVEFKEFSRKFTIDI
IATCAFGIEVNSFENANNDFMRI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g13580.t13 Gene3D G3DSA:1.10.630.10 Cytochrome p450 13 203 3.2E-29
2 g13580.t13 PANTHER PTHR24292 CYTOCHROME P450 11 202 2.2E-42
3 g13580.t13 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 11 202 2.2E-42
1 g13580.t13 Pfam PF00067 Cytochrome P450 35 200 2.0E-10
8 g13580.t13 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
9 g13580.t13 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
10 g13580.t13 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
11 g13580.t13 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
7 g13580.t13 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 203 -
4 g13580.t13 SUPERFAMILY SSF48264 Cytochrome P450 31 202 1.31E-17
5 g13580.t13 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed